Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq72241 95.1 1e-14 seq73807 87.8 1e-12 seq71687 86.0 5e-12 >seq72241 Length=55963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||||||| |||| ||||||||||| || | || ||| | Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | || || |||||| || || ||||| | || ||||| Sbjct 40342 GATACTATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCTGATCAG 40283 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| || || || |||||||| || | ||||| | ||||||||||| Sbjct 40282 CAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAAT 40223 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || | || | || || || || |||||||| Sbjct 40222 ATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAGGCTTCGAGGGGG 40176 >seq73807 Length=69832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 ||||| || |||||||| ||| | || || || ||| ||||| | ||| || || || Sbjct 39154 ATGCAGATCTTTGTCAAGACTCTTACTGGGAAGACCGTTACCCTAGAAGTAGAAAGCTCT 39095 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | || || |||||| |||||||||||| | ||| || Sbjct 39094 GA---TACGATTGATAACGTTAAGGCTAAGATTCAAGACAAAGAAGGCATTCCCCCTGAC 39038 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | ||| ||||||||||| ||||||| || ||| | || ||||| Sbjct 39037 CAGCAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTGCTGATTAT 38978 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| ||||| || || || |||| ||||||| Sbjct 38977 AACATCCAAAAGGAGTCAACTCTGCATTTGGTGTT 38943 >seq71687 Length=64904 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| | || || || ||||||||| |||| || | Sbjct 44915 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAATCC 44856 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | | || || |||||| || || |||||| | || |||| Sbjct 44855 TCCGATACCATTGACAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCACCGGAT 44796 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| || || ||||| ||||| | ||| || | ||||||||| Sbjct 44795 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGAAGGCAGGACCTTAGCGGATTAC 44736 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || || || || ||||| |||| Sbjct 44735 AACATCCAGAAGGAGTCGACACTGCACCTGGT 44704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412442591431886