Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 95.1 1e-14
seq73807 87.8 1e-12
seq71687 86.0 5e-12
>seq72241
Length=55963
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
|||||||| |||||||||||| |||| ||||||||||| || | || ||| |
Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|||||| | | | | || || |||||| || || ||||| | || |||||
Sbjct 40342 GATACTATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCTGATCAG 40283
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || |||| || || || |||||||| || | ||||| | |||||||||||
Sbjct 40282 CAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAAT 40223
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
||||| || || || || | || | || || || || ||||||||
Sbjct 40222 ATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAGGCTTCGAGGGGG 40176
>seq73807
Length=69832
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329
||||| || |||||||| ||| | || || || ||| ||||| | ||| || || ||
Sbjct 39154 ATGCAGATCTTTGTCAAGACTCTTACTGGGAAGACCGTTACCCTAGAAGTAGAAAGCTCT 39095
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|| ||| | | | || || |||||| |||||||||||| | ||| ||
Sbjct 39094 GA---TACGATTGATAACGTTAAGGCTAAGATTCAAGACAAAGAAGGCATTCCCCCTGAC 39038
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || | || || | ||| ||||||||||| ||||||| || ||| | || |||||
Sbjct 39037 CAGCAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTGCTGATTAT 38978
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484
||||| ||||| || || || |||| |||||||
Sbjct 38977 AACATCCAAAAGGAGTCAACTCTGCATTTGGTGTT 38943
>seq71687
Length=64904
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329
|| ||||| || || || ||||| | || || || ||||||||| |||| || |
Sbjct 44915 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAATCC 44856
Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389
|||||| | | | | || || |||||| || || |||||| | || ||||
Sbjct 44855 TCCGATACCATTGACAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCACCGGAT 44796
Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449
|| || || || || | ||| || || ||||| ||||| | ||| || | |||||||||
Sbjct 44795 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGAAGGCAGGACCTTAGCGGATTAC 44736
Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481
||||| || || || || || ||||| ||||
Sbjct 44735 AACATCCAGAAGGAGTCGACACTGCACCTGGT 44704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412442591431886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |