Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq35021 140 5e-27 seq39070 136 6e-26 >seq35021 Length=73443 Score = 140 bits (154), Expect = 5e-27 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 ||| |||| | || || || |||||||| || ||||| || ||||| || ||||| Sbjct 66395 GGCTTCGGAAATCTGAACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCC 66454 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 || |||||||| |||||||| ||||| |||| ||||||||||||||| |||| Sbjct 66455 ATCAGAAGCGGCGAAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAG 66514 Query 796269 CGAGACCCAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||| | ||| | ||| || |||||||||||||||||||| ||||| | Sbjct 66515 GGCTTCCCA-TTGACGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAG 66573 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||| ||||| |||||||||||||| ||| | |||| | || ||||||| Sbjct 66574 CCTCTGCCTTCTTGTACATCTCCCAAATCTGAGGGTATTGAATTGGGAACA 66624 Score = 136 bits (150), Expect = 6e-26 Identities = 227/326 (70%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| || ||| || ||||| ||| || |||||||| ||||| || || Sbjct 66071 ACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCGGGCATAAGGCCACGTTT 66130 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| | |||||| || || || ||||| ||||||||||| || || ||||| || || Sbjct 66131 CTTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAATATTCCTTCGACACAAGCGAA 66190 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| | || |||||||| | ||| ||| || |||||| | ||||| Sbjct 66191 GGCGACTATACGTTCGGCAAAGGATTCCGAGCC------GTCGATCCAACGAAGTGCCCA 66244 Query 794520 CTCTGCCTTTTTCCTCACCG-AGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | ||||| || ||| || | || | || ||||| ||||||||||| || ||||| Sbjct 66245 TTTGGCCTTCTT-TTCAACGCAAGGAATTGTTTCGATTGCGCGAAAGAGTCTGTTCTTCT 66303 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | |||||| | ||| | |||| | ||| || |||| ||||| || || | Sbjct 66304 CATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTCGGAGTGAATATTCT 66363 Query 794639 CGATGGCGATCTGGAAGCCATAAAAG 794664 |||||||||| ||||| || |||||| Sbjct 66364 CGATGGCGATTTGGAAACCGTAAAAG 66389 >seq39070 Length=11651 Score = 136 bits (150), Expect = 6e-26 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||| | | ||| || || |||||||| |||||||| || ||||| || || || Sbjct 7590 GGCCTCTGAAATTTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACC 7531 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 || ||||| ||||||||||| ||||| |||| ||||||||||||||| | || Sbjct 7530 ATCAGAAGCGGCAAAAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAG 7471 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | |||| ||| ||| ||| ||||| |||||||| ||||| || ||||| Sbjct 7470 GGCTTCCCATTGGCGGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGC 7411 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||||||| |||||||| ||||| ||| | |||| | || ||||||| Sbjct 7410 CTCGGCCTTCTTGTACATTTCCCAAATCTGAGGGTATTGAATTGGGAACA 7361 Score = 122 bits (134), Expect = 1e-21 Identities = 200/287 (70%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 |||||||| || || || ||||| |||||||| || ||||| ||||| ||||||||||| Sbjct 7874 CCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 7815 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 || ||||| || |||||| |||||| ||||| ||||| | ||| ||| || Sbjct 7814 ATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATC---- 7759 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCT--TTTTCCTCACCGAGGGCACCGTGTCGATGG 794557 |||||| | ||||| | |||| ||||| ||| | || | || || || | Sbjct 7758 --GATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACAC--AAGGAATGGTCTCAATCG 7703 Query 794558 CGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGT 794617 | |||||||| | ||||||| | | ||||| | ||||| |||| | || | Sbjct 7702 CACGAAAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTAT 7643 Query 794618 AGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 | |||| ||||| || || ||||| || || || ||||| |||||| Sbjct 7642 ACATCTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAG 7596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7907810684563578