Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 125 6e-24
seq71687 95.1 1e-14
seq65811 95.1 1e-14
seq73807 93.3 3e-14
>seq72241
Length=55963
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||||||||||||||||||| |||||||||||||||| || | || ||| |
Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|||||| | | | | || || ||||||| ||||| ||||| | || ||||||
Sbjct 40342 GATACTATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCTGATCAG 40283
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || |||| || || || |||||||| |||| | ||| | ||||| |||||
Sbjct 40282 CAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAAT 40223
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| |||||||| || | || | || ||||| | ||||||||
Sbjct 40222 ATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAGGCTTCGAGGGGG 40176
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||| |||||| | || ||||| || ||||| | ||| ||| | |
Sbjct 40630 ATGCAGATATTTGTTAAAACTCTGACCGGCAAGACGATTACTCTTGAAGTTGAGAGTTCC 40571
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || |||||| ||||| || || | || |||||||
Sbjct 40570 GATACAATTGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCTCCGGATCAG 40511
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| ||||| | || || || ||| ||||||||| || || | || || |||||
Sbjct 40510 CAGAGGCTTATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTCTCGCCGATTACAAT 40451
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
|| |||||||| ||||| | || | || ||||| | || |||||
Sbjct 40450 ATCCAAAAGGAATCTACTCTTCATCTCGTCTTGAGGCTCCGTGGGGG 40404
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||||||||| || | || || ||||| ||||| | || || |
Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| ||| | || || ||||||| ||||||||||| | || ||||||
Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAA 40055
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| ||||| || | ||| || || ||| |||| |||| || | || || || |||
Sbjct 40054 CAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATAAC 39995
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768
|||||||||||||| || | || ||||||||
Sbjct 39994 ATTCAAAAGGAGTCCACTCTTCATCTGGTGTTG 39962
>seq71687
Length=64904
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
|| ||||| || || || ||||| | || || || ||||||||| |||| || |
Sbjct 44915 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAATCC 44856
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|||||| | | | | || || ||||| ||||| |||||| | || ||||
Sbjct 44855 TCCGATACCATTGACAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCACCGGAT 44796
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||||| || || | ||| || || ||||| ||||| | || || | ||||| |||
Sbjct 44795 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGAAGGCAGGACCTTAGCGGATTAC 44736
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| || |||||||| || ||||| |||| | | ||||| || ||
Sbjct 44735 AACATCCAGAAGGAGTCGACACTGCACCTGGTCCTTCGCTTGCGCGGTGG 44686
>seq65811
Length=66007
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| |||||||| || || || || || ||||| || ||||| ||| |||
Sbjct 55235 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACGCTCGAAGTTGAGAGCTC- 55177
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | | ||||| || ||| || || |||||| | || || ||
Sbjct 55176 CGACACCATCGACAACGTAAAGGCTAAAATTCAAGACAAGGAAGGCATTCCACCAGACCA 55117
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||| ||| | || | || ||||| ||||| ||||||| | || |||| ||||||||
Sbjct 55116 GCAAAGATTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAA 55057
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
||||||||||| || || | ||| |||||
Sbjct 55056 TATTCAAAAGGAATCCACCCTTCACTTGGTG 55026
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || || || || ||| | || || || ||||| || ||||| ||| |||
Sbjct 55463 ATGCAGATCTTCGTTAAGACTCTTACCGGAAAGACCATCACTCTCGAAGTCGAGAGCTC- 55405
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | || || |||||| ||||| || || | || || ||
Sbjct 55404 CGACACCATCGATAACGTCAAGGCAAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCA 55345
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||| || || || | ||| || || ||||| ||||||| || ||| | ||||| |||||
Sbjct 55344 GCAAAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTTGCGGATTACAA 55285
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|||||||||||||||||| | ||| ||||
Sbjct 55284 CATTCAAAAGGAGTCTACCCTCCACTTGGT 55255
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
|||||||| |||||||| ||| | || || |||||||| ||| | || ||| |||
Sbjct 55007 ATGCAAATCTTTGTCAAGACTCTCACCGGAAAAACCATCACCCTGGAGGTTGAGAGCTC- 54949
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || | | | | || ||| |||||| || || || || | || || ||
Sbjct 54948 CGACACCATTGACAACGTGAAAGCCAAGATTCAAGACAAGGAGGGTATTCCACCAGACCA 54889
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | || | ||| || || ||||| || |||| | || |||||||||||||
Sbjct 54888 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGCACCTTGGCGGACTACAA 54829
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|||||| ||||| || || | ||| |||||
Sbjct 54828 CATTCAGAAGGAATCCACCCTTCACTTGGTG 54798
>seq73807
Length=69832
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| ||| | || || || ||| ||||| | ||| || |||
Sbjct 39154 ATGCAGATCTTTGTCAAGACTCTTACTGGGAAGACCGTTACCCTAGAAGTAGAAAGCTCT 39095
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| | | | || || |||||| || ||||||||| | ||| || ||
Sbjct 39094 -GATACGATTGATAACGTTAAGGCTAAGATTCAAGACAAAGAAGGCATTCCCCCTGACCA 39036
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || || | ||| ||||||||||| ||||| | | ||| | || || || ||
Sbjct 39035 GCAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTGCTGATTATAA 38976
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781
||| ||||||||||| || |||| |||||||| | || ||||||
Sbjct 38975 CATCCAAAAGGAGTCAACTCTGCATTTGGTGTTGCGTTT--GAGGGG 38931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398491288315078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |