Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq72241 125 6e-24 seq71687 95.1 1e-14 seq65811 95.1 1e-14 seq73807 93.3 3e-14 >seq72241 Length=55963 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||||||| |||||||||||||||| || | || ||| | Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || || ||||||| ||||| ||||| | || |||||| Sbjct 40342 GATACTATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCTGATCAG 40283 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| || || || |||||||| |||| | ||| | ||||| ||||| Sbjct 40282 CAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAAT 40223 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| || | || | || ||||| | |||||||| Sbjct 40222 ATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAGGCTTCGAGGGGG 40176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| |||||| | || ||||| || ||||| | ||| ||| | | Sbjct 40630 ATGCAGATATTTGTTAAAACTCTGACCGGCAAGACGATTACTCTTGAAGTTGAGAGTTCC 40571 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| ||||| || || | || ||||||| Sbjct 40570 GATACAATTGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCTCCGGATCAG 40511 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | || || || ||| ||||||||| || || | || || ||||| Sbjct 40510 CAGAGGCTTATCTTCGCCGGGAAGCAGTTGGAGGACGGCAGGACTCTCGCCGATTACAAT 40451 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| ||||| | || | || ||||| | || ||||| Sbjct 40450 ATCCAAAAGGAATCTACTCTTCATCTCGTCTTGAGGCTCCGTGGGGG 40404 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || || ||||| ||||| | || || | Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || ||||||| ||||||||||| | || |||||| Sbjct 40114 GATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAA 40055 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| || | ||| || || ||| |||| |||| || | || || || ||| Sbjct 40054 CAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATAAC 39995 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||||||| || | || |||||||| Sbjct 39994 ATTCAAAAGGAGTCCACTCTTCATCTGGTGTTG 39962 >seq71687 Length=64904 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| | || || || ||||||||| |||| || | Sbjct 44915 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAATCC 44856 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| | | | | || || ||||| ||||| |||||| | || |||| Sbjct 44855 TCCGATACCATTGACAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCACCGGAT 44796 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || ||||| ||||| | || || | ||||| ||| Sbjct 44795 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGAAGGCAGGACCTTAGCGGATTAC 44736 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||| || ||||| |||| | | ||||| || || Sbjct 44735 AACATCCAGAAGGAGTCGACACTGCACCTGGTCCTTCGCTTGCGCGGTGG 44686 >seq65811 Length=66007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || || || || || ||||| || ||||| ||| ||| Sbjct 55235 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACGCTCGAAGTTGAGAGCTC- 55177 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | ||||| || ||| || || |||||| | || || || Sbjct 55176 CGACACCATCGACAACGTAAAGGCTAAAATTCAAGACAAGGAAGGCATTCCACCAGACCA 55117 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | || ||||| ||||| ||||||| | || |||| |||||||| Sbjct 55116 GCAAAGATTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAA 55057 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||| || || | ||| ||||| Sbjct 55056 TATTCAAAAGGAATCCACCCTTCACTTGGTG 55026 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || ||| | || || || ||||| || ||||| ||| ||| Sbjct 55463 ATGCAGATCTTCGTTAAGACTCTTACCGGAAAGACCATCACTCTCGAAGTCGAGAGCTC- 55405 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || |||||| ||||| || || | || || || Sbjct 55404 CGACACCATCGATAACGTCAAGGCAAAGATCCAGGATAAGGAGGGAATTCCTCCAGACCA 55345 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || || ||||| ||||||| || ||| | ||||| ||||| Sbjct 55344 GCAAAGGCTGATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTTGCGGATTACAA 55285 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||||||||||||||| | ||| |||| Sbjct 55284 CATTCAAAAGGAGTCTACCCTCCACTTGGT 55255 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| ||| | || || |||||||| ||| | || ||| ||| Sbjct 55007 ATGCAAATCTTTGTCAAGACTCTCACCGGAAAAACCATCACCCTGGAGGTTGAGAGCTC- 54949 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || ||| |||||| || || || || | || || || Sbjct 54948 CGACACCATTGACAACGTGAAAGCCAAGATTCAAGACAAGGAGGGTATTCCACCAGACCA 54889 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||||| || |||| | || ||||||||||||| Sbjct 54888 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGCACCTTGGCGGACTACAA 54829 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||| || || | ||| ||||| Sbjct 54828 CATTCAGAAGGAATCCACCCTTCACTTGGTG 54798 >seq73807 Length=69832 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || || || ||| ||||| | ||| || ||| Sbjct 39154 ATGCAGATCTTTGTCAAGACTCTTACTGGGAAGACCGTTACCCTAGAAGTAGAAAGCTCT 39095 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || |||||| || ||||||||| | ||| || || Sbjct 39094 -GATACGATTGATAACGTTAAGGCTAAGATTCAAGACAAAGAAGGCATTCCCCCTGACCA 39036 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| ||||||||||| ||||| | | ||| | || || || || Sbjct 39035 GCAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTGCTGATTATAA 38976 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| ||||||||||| || |||| |||||||| | || |||||| Sbjct 38975 CATCCAAAAGGAGTCAACTCTGCATTTGGTGTTGCGTTT--GAGGGG 38931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398491288315078