Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 96.9 5e-15
seq73807 86.0 1e-11
>seq72241
Length=55963
Score = 96.9 bits (106), Expect = 5e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | || || | || || ||||| |||||| |||| || ||| | |
Sbjct 40173 TGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCTG 40114
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || | ||||| || || || || ||||||||| ||||| || |||||||
Sbjct 40113 ATACCATCGATAATGTCAAGGCAAAGATTCAGGATAAAGAAGGGATTCCTCCGGATCAAC 40054
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||||| || ||||| || || || || || || | | || || | |||||||| |
Sbjct 40053 AAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCTGATTATAACA 39994
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||| || || ||| | ||| | || || || | || || ||||
Sbjct 39993 TTCAAAAGGAGTCCACTCTTCATCTGGTGTTGCGTCTGAGGGGTGGTA 39946
>seq73807
Length=69832
Score = 86.0 bits (94), Expect = 1e-11
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| | || || || ||| || ||| |||||||||||||| || || ||
Sbjct 39094 GATACGATTGATAACGTTAAGGCTAAGATTCAAGACAAAGAAGGCATTCCCCCTGACCAG 39035
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
|| | || || ||||| |||||||| | || ||| ||| || | | ||||||||
Sbjct 39034 CAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTGCTGATTATAAC 38975
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
|| ||||| || || ||| | ||||| || || || || || |||||
Sbjct 38974 ATCCAAAAGGAGTCAACTCTGCATTTGGTGTTGCGTTTGAGGGGAGG 38928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785387092901840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |