Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq72241 89.7 9e-13 >seq72241 Length=55963 Score = 89.7 bits (98), Expect = 9e-13 Identities = 102/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697 ||||| | ||||| || || |||||||||| |||||| | || |||||| ||| Sbjct 39975 AGAGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTACGACCGTCTTCCAACTGCTTC 40034 Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||||| |||||||||||| | ||| | || |||| ||||| ||||||||||| Sbjct 40035 CCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTTATCCTGAATCTTTGCC 40094 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||| || || |||| Sbjct 40095 TTGACATTATCGATGGTAT 40113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902515671062720