Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq71687 116 4e-21 seq72241 111 2e-19 seq65811 111 2e-19 seq67817 109 5e-19 seq53817 109 5e-19 seq42370 100 3e-16 seq73807 96.9 3e-15 seq64144 93.3 4e-14 seq25273 93.3 4e-14 seq55661 86.0 6e-12 >seq71687 Length=64904 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | | || ||||||||||||||||| Sbjct 44716 GTCGACTCCTTCTGGATGTTGTAATCCGCTAAGGTCCTGCCTTCCTCGAGCTGCTTGCCG 44775 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||||| |||||| || || |||||||||||||| || |||||| ||| Sbjct 44776 GCAAAGATGAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTATCTTGGATCTTCGCCTTC 44835 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || |||| || || || |||| ||| | ||| || || ||||| ||| Sbjct 44836 ACATTGTCAATGGTATCGGAGGATTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTT 44895 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 44896 TTCACGAAGATCTGCAT 44912 >seq72241 Length=55963 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||||| ||| ||||| ||||| ||||||||||| | | || ||| || ||||| Sbjct 40199 ATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCTTCCAGCTG 40258 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || ||| |||| || |||||||| || ||||| || |||||||| || ||||| Sbjct 40259 CTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTATCTTGAATCTT 40318 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | ||| | | |||| || || | ||||| || | |||| ||||||||| || Sbjct 40319 TGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGTTTTGCCTGT 40378 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || ||||| ||||| Sbjct 40379 TAGAGTTTTGACAAAAATTTGCAT 40402 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| ||||| |||||| | | || || || |||||||| || |||| Sbjct 40662 GTAGACTCCTTCTGGATATTATAATCGGCGAGGGTTCGGCCG--TCCTCGAGTTGTTTGC 40719 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || |||||||| ||||||||||| || |||||||| ||||| || Sbjct 40720 CGGCGAAGATTAGGCGCTGCTGATCGGGAGGGATTCCCTCCTTGTCTTGAATCTTAGCCT 40779 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || |||| | ||| || || | ||| | || || ||||| || | Sbjct 40780 TGACATTGTCGATTGTATCGGAGCTCTCGACCTCAAGGGTAATTGTCTTACCGGTTAGGG 40839 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 40840 TTTTCACGAAGATCTGCAT 40858 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || || || |||||||||||| | | || |||||| | |||||| || Sbjct 40434 GTAGATTCCTTTTGGATATTGTAATCGGCGAGAGTCCTGCCGTCCTCCAACTGCTTCCCG 40493 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| |||||| || ||||| || || ||||| || ||||| |||| Sbjct 40494 GCGAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCCTTATCCTGAATCTTGGCCTTG 40553 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| || |||| ||| || || | || | || ||||||||||||||| Sbjct 40554 ACGTTGTCAATTGTATCGGAACTCTCAACTTCAAGAGTAATCGTCTTGCCGGTCAGAGTT 40613 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 40614 TTAACAAATATCTGCAT 40630 >seq65811 Length=66007 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| || || || |||||||| | | || |||||||||| Sbjct 55258 AAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCAAGGGTTCTGCCGTCCTCGAGC 55317 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || |||| |||||||| ||||| || || ||||| || |||| Sbjct 55318 TGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGAATTCCCTCCTTATCCTGGATC 55377 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | ||||||| | ||| || |||| |||| ||| || ||| Sbjct 55378 TTTGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGACTTCGAGAGTGATGGTCTTTCCG 55437 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| |||||||| Sbjct 55438 GTAAGAGTCTTAACGAAGATCTGCAT 55463 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || || || |||||||| ||| ||| ||| |||||||||| Sbjct 55030 AAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGC 55089 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | | |||||||| || || |||||||||||||| ||| Sbjct 55090 TGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAAT 55148 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||| | | || | ||||||| | ||| || |||| |||| ||| || || Sbjct 55149 TTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACTTCGAGCGTGATGGTCTTTCC 55208 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || ||||| Sbjct 55209 GGTCAAGGTCTTGACAAAGATTTGCAT 55235 >seq67817 Length=4127 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517 || |||||||| || ||||| || ||||| || | | || |||| ||||| ||| Sbjct 1411 TGAATGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCTGTAGTCTTCGAGTTGC 1470 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 || || ||| | ||||| ||||||||||| || |||||||| |||||||| | || || Sbjct 1471 TTCCCGGCGAAGATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCGAAATTTTG 1530 Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 ||||| | |||| || | || || || || || | ||||| ||| || || || Sbjct 1531 GCCTTGACATTGTCAATGGTATTGGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTG 1590 Query 133638 AGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| |||| ||| Sbjct 1591 AGGGTTTTCACGAAGATCTACAT 1613 >seq53817 Length=15024 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| || | | || ||| ||||||||||| || Sbjct 3659 GGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGCCGTCTTCGAGCTGCTTACC 3718 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| | ||||| ||||||||||| || |||||||| |||||||| ||| ||| | || Sbjct 3719 GGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTC-CTGAATTTTGGCCT 3777 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || || | || || || || | ||||| ||| || || || || | Sbjct 3778 TGACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGG 3837 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 3838 TTTTCACGAAGATCTGCAT 3856 >seq42370 Length=41228 Score = 100 bits (110), Expect = 3e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCT 133515 ||| | ||| |||||||| || |||||||||||| | | || | | | ||||| | | Sbjct 10181 ATGAAGGGTCGACTCTTTTTGAATATTGTAATCGGCAAGAGTCCGGCCA-TCCTCCAATT 10123 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | ||||||| |||||||| |||||||| |||||||| || ||| | Sbjct 10122 GCTTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGAGGGATCCCTTCCTTATC-CTGAATT 10064 Query 133576 TTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || | ||||| | |||| ||||||| ||| || |||| || | || || ||| Sbjct 10063 TTAGCCTTGACGTTGTCAATAGTGTCGGAACTCTCAACCTCGAGAGTAATCGTCTTTCCG 10004 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || |||||||| Sbjct 10003 GTTAGGGTTTTAACAAATATCTGCAT 9978 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| ||||||||||| ||| || | | | |||||||||||||| | Sbjct 10859 GGTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTACGTCCA-TCCTCGAGCTGCTTCC 10801 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||| |||||| || || || || || ||||| || |||||| || Sbjct 10800 CAGCGAAGATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTTGGCCT 10741 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | | ||| || || | || | ||||| || |||| | Sbjct 10740 TCACATTATCTATGGTATCTGAGCTCTCAACCTCCAGAGTAATAGTTTTCCCTGTCAATG 10681 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 10680 TCTTGACAAATATCTGCAT 10662 >seq73807 Length=69832 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCG 133511 || || | ||||||||| ||||| ||||| || || | | || || | | |||||| Sbjct 38721 AAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTCCTG--CCA-TCCTCG 38777 Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||||||||| || | || |||| ||| || || ||||| || ||||||||||| || Sbjct 38778 AGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGAATTCCTTCCTTGTC-CTG 38836 Query 133572 ATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTT 133630 | |||||| || | | |||| || || | | |||||| || | |||| || || Sbjct 38837 AATTTTTGCTTTCACATTATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATTGTCTT 38896 Query 133631 GCCGGTCAGAGTTTTTACGAAAATCTGCATGGCT 133664 || || || || || |||||||| |||||| || Sbjct 38897 CCCTGTAAGTGTCTTCACGAAAATTTGCATGCCT 38930 >seq64144 Length=11632 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| ||||| ||||| || ||| | | ||| ||||||||||| | |||||||| ||||| Sbjct 9165 GTCTTCGAGTTGCTTCCCGGCGAAGAGGAGACGCTGCTGGTCTAGTGGGATGCCGTCCTT 9224 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| | || || ||||| | |||| || |||| || || || || | |||| Sbjct 9225 GTCCGAAATTTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCAACCTCAAGAGTGAT 9284 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || ||||| ||||| |||||||| Sbjct 9285 GGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCAT 9320 >seq25273 Length=6599 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| |||||||| || | || ||| ||||||||||| || Sbjct 382 GTGGATTCCTTCTGGATATTGTAGTCAGGTAGTGTTCTGCTGTCTTCGAGCTGCTTCCCG 323 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 | | | ||||| || |||||||| || |||||||| ||||| || ||| ||| | ||| Sbjct 322 GAGAAGATGAGACGTTGCTGGTCCGGTGGGATGCCCTCCTTCTC-CTGAATTTTGGCCTT 264 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || ||| || || || || | ||||| ||| || || || || || Sbjct 263 GACATTGTCAATGGTATCGAAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGT 204 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 203 TTTCACGAAGATCTGCAT 186 >seq55661 Length=20824 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || ||||||||||| | ||| | ||||| ||||||| ||| || ||||||| |||||| Sbjct 2533 TCTTCGAGCTGCTTCTCGGCGAAGATGAGACGCTGCT-GTCCGGTGGGATGCTCTCCTTG 2475 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| | ||||| | |||| || |||| || || || || | ||||| Sbjct 2474 TC-CTGAATTTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCGACCTCAAAGGTGAT 2416 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || | || ||||| ||||| |||||||| Sbjct 2415 GGTCTTTCCCATGAGGGTTTTCACGAAGATCTGCAT 2380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482941597046480