Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq23399 98.7 2e-15
seq39180 84.2 5e-11
>seq23399
Length=40190
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/187 (74%), Gaps = 10/187 (5%)
Strand=Plus/Minus
Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366
|||| ||||||| |||| ||||| || ||| | ||||| |||||||||||||
Sbjct 8245 GACACCTGAATGATGGAGATTTTGTTCTTTTTAATCGACAACCTAGTCTGCATAAAATGT 8186
Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAAT--GTA 305422
| || |||| |||| ||||| || || | ||| ||| |||||||| ||| ||
Sbjct 8185 CCATAATGGGGCATAGGATCAAA--ATCATGCCATATTCGACTTTTCGATTGAATTTGTC 8128
Query 305423 AGTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481
||| ||| | || |||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 8127 AGTCACTT---CACCATATAATGCTGATTTTGATGGAGATGAAATGAACATGCACGTTCC 8071
Query 305482 TCAATCA 305488
|| |||
Sbjct 8070 CCAGTCA 8064
>seq39180
Length=8657
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264
|||| |||||||||| | || | || || || |||| | ||||||||||||| |||
Sbjct 875 ATTTGAAAAGAGCACATCAAGTTTTCATCAACACTCATCATTGCACCAGCATTATCAAAT 934
Query 167265 TCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGA-AAAATAATTC 167323
||| ||| |||||||||||||| | ||||| || || | || | ||| |||||
Sbjct 935 TCACCACAATAGTTTGGTGCTGAAAAAATGGTAAC-AAGTTGCCTTTCAGCAAAGAATTC 993
Query 167324 ATAACCATCTTCAACAAC 167341
||||||||| || |||||
Sbjct 994 ATAACCATCCTCCACAAC 1011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1185606930695222
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |