Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq23399 98.7 2e-15 seq39180 84.2 5e-11 >seq23399 Length=40190 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/187 (74%), Gaps = 10/187 (5%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 |||| ||||||| |||| ||||| || ||| | ||||| ||||||||||||| Sbjct 8245 GACACCTGAATGATGGAGATTTTGTTCTTTTTAATCGACAACCTAGTCTGCATAAAATGT 8186 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAAT--GTA 305422 | || |||| |||| ||||| || || | ||| ||| |||||||| ||| || Sbjct 8185 CCATAATGGGGCATAGGATCAAA--ATCATGCCATATTCGACTTTTCGATTGAATTTGTC 8128 Query 305423 AGTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| ||| | || |||||||| ||||||||||||||||||||||| ||||| || || Sbjct 8127 AGTCACTT---CACCATATAATGCTGATTTTGATGGAGATGAAATGAACATGCACGTTCC 8071 Query 305482 TCAATCA 305488 || ||| Sbjct 8070 CCAGTCA 8064 >seq39180 Length=8657 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||| |||||||||| | || | || || || |||| | ||||||||||||| ||| Sbjct 875 ATTTGAAAAGAGCACATCAAGTTTTCATCAACACTCATCATTGCACCAGCATTATCAAAT 934 Query 167265 TCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGA-AAAATAATTC 167323 ||| ||| |||||||||||||| | ||||| || || | || | ||| ||||| Sbjct 935 TCACCACAATAGTTTGGTGCTGAAAAAATGGTAAC-AAGTTGCCTTTCAGCAAAGAATTC 993 Query 167324 ATAACCATCTTCAACAAC 167341 ||||||||| || ||||| Sbjct 994 ATAACCATCCTCCACAAC 1011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185606930695222