Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq73807 98.7 7e-16
seq42370 95.1 8e-15
seq65811 93.3 3e-14
>seq73807
Length=69832
Score = 98.7 bits (108), Expect = 7e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || |||||||| ||||||||||| ||||| ||| ||||| ||||| ||||| |
Sbjct 38928 CCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 38987
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | | || || | ||||| |||||||| |||| ||||||||| || | ||
Sbjct 38988 AGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 39047
Query 33643 ACACCTTCTTTGTC 33656
| |||||||||||
Sbjct 39048 ATGCCTTCTTTGTC 39061
Score = 86.0 bits (94), Expect = 4e-12
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597
|| || | ||| || ||| ||| |||||||||||||| || | || || || | ||
Sbjct 39627 AAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTGCAAGGGTACGGCCATCC 39686
Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657
|||| |||||| || || |||||||| | ||||| ||| | || | || || |||||
Sbjct 39687 TCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 39746
Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGAT 33713
||||| | || |||| ||| | ||||| ||| ||| || |||| |||||
Sbjct 39747 TGGATTTT-GGCTTTGACATTGTCAATTGTGTCTGAGCT---TTCAACTTCAAGGGTGAT 39802
Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || ||||| | || || |||||||| |||||
Sbjct 39803 GGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838
Score = 84.2 bits (92), Expect = 1e-11
Identities = 145/207 (70%), Gaps = 8/207 (4%)
Strand=Plus/Plus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| || ||| ||| ||||| || ||||| || | || || || | || || | ||||
Sbjct 39180 TGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCCAGGGTACGGCCATCCTCAAGTTGT 39239
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| || ||||||||||| || ||||| ||| | || | || || ||||| ||||||
Sbjct 39240 TTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTT- 39298
Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722
| || ||| | ||| | ||||| ||| ||| || |||| || || || || ||
Sbjct 39299 GGCTTTAACGTTGTCAATTGTGTCTGAGCT---TTCAACTTCAAGGGTAATGGTCTTTCC 39355
Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749
||| | || || ||||||||||||||
Sbjct 39356 TGTCAGAGTCTTGACAAAGATCTGCAT 39382
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597
|| || | ||| || ||| ||| ||||||||||| ||||| | || || || | ||
Sbjct 39855 AAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGCAAGGGTACGACCATCC 39914
Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657
|||| |||||| || ||||| ||||| | ||||||||| | || | ||||| |||||
Sbjct 39915 TCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGGAATTCCTTCCTTGTCT 39974
Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716
|||||| || || |||| || | ||||| || || || | || || ||
Sbjct 39975 TGAATTTT-TGCTTTGACATTATCAATAGTGTCAGAACTCTCTACTTCGAGAGTTATTGT 40033
Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || || | || || ||||||||||||||
Sbjct 40034 CTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066
>seq42370
Length=41228
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||||| ||| | ||||| ||| || ||| ||| ||||| ||||| ||||| |
Sbjct 10661 ACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGC 10602
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | | || ||||| || || |||||||| ||||| | |||||| || | ||
Sbjct 10601 TAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 10542
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || ||| || || | ||||| || | || || ||| |
Sbjct 10541 AATCCCTTCCTTATCCTGAATCTT-TGCCTTAACATTATCAATTGTATCAGAACTTTCAA 10483
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| |||| || || |||||||| || | || || ||||| ||||||||
Sbjct 10482 CCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434
>seq65811
Length=66007
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | |||||| || || ||| || || || |||||||| || |
Sbjct 54780 ACCACCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGC 54839
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| |||| || | || ||||||||||| ||||| | |||||| ||| | ||
Sbjct 54840 CAAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 54899
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| ||| || |||| || | ||| | ||||||| || |
Sbjct 54900 AATACCCTCCTTGTCTTGAATCTTGGCTTTC-ACGTTGTCAATGGTGTCGGAGCTCTCAA 54958
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| ||||| || || | || || |||||||| ||||||
Sbjct 54959 CCTCCAGGGTGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCATA 55008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328386309843840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |