Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq73807 98.7 7e-16 seq42370 95.1 8e-15 seq65811 93.3 3e-14 >seq73807 Length=69832 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||||||| ||||||||||| ||||| ||| ||||| ||||| ||||| | Sbjct 38928 CCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGCA 38987 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | ||||| |||||||| |||| ||||||||| || | || Sbjct 38988 AGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGGA 39047 Query 33643 ACACCTTCTTTGTC 33656 | ||||||||||| Sbjct 39048 ATGCCTTCTTTGTC 39061 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || | ||| || ||| ||| |||||||||||||| || | || || || | || Sbjct 39627 AAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTGCAAGGGTACGGCCATCC 39686 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||| |||||| || || |||||||| | ||||| ||| | || | || || ||||| Sbjct 39687 TCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 39746 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGAT 33713 ||||| | || |||| ||| | ||||| ||| ||| || |||| ||||| Sbjct 39747 TGGATTTT-GGCTTTGACATTGTCAATTGTGTCTGAGCT---TTCAACTTCAAGGGTGAT 39802 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || ||||| | || || |||||||| ||||| Sbjct 39803 GGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCAT 39838 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| || ||||| || | || || || | || || | |||| Sbjct 39180 TGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCCAGGGTACGGCCATCCTCAAGTTGT 39239 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||||||||| || ||||| ||| | || | || || ||||| |||||| Sbjct 39240 TTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTT- 39298 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 | || ||| | ||| | ||||| ||| ||| || |||| || || || || || Sbjct 39299 GGCTTTAACGTTGTCAATTGTGTCTGAGCT---TTCAACTTCAAGGGTAATGGTCTTTCC 39355 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| | || || |||||||||||||| Sbjct 39356 TGTCAGAGTCTTGACAAAGATCTGCAT 39382 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || | ||| || ||| ||| ||||||||||| ||||| | || || || | || Sbjct 39855 AAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGCAAGGGTACGACCATCC 39914 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||| |||||| || ||||| ||||| | ||||||||| | || | ||||| ||||| Sbjct 39915 TCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGGAATTCCTTCCTTGTCT 39974 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| || || |||| || | ||||| || || || | || || || Sbjct 39975 TGAATTTT-TGCTTTGACATTATCAATAGTGTCAGAACTCTCTACTTCGAGAGTTATTGT 40033 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | || || |||||||||||||| Sbjct 40034 CTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066 >seq42370 Length=41228 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||| ||| || ||| ||| ||||| ||||| ||||| | Sbjct 10661 ACCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGC 10602 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || ||||| || || |||||||| ||||| | |||||| || | || Sbjct 10601 TAGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGG 10542 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || | ||||| || | || || ||| | Sbjct 10541 AATCCCTTCCTTATCCTGAATCTT-TGCCTTAACATTATCAATTGTATCAGAACTTTCAA 10483 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| || || |||||||| || | || || ||||| |||||||| Sbjct 10482 CCTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 >seq65811 Length=66007 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || || ||| || || || |||||||| || | Sbjct 54780 ACCACCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGC 54839 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| |||| || | || ||||||||||| ||||| | |||||| ||| | || Sbjct 54840 CAAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 54899 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || |||| || | ||| | ||||||| || | Sbjct 54900 AATACCCTCCTTGTCTTGAATCTTGGCTTTC-ACGTTGTCAATGGTGTCGGAGCTCTCAA 54958 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || | || || |||||||| |||||| Sbjct 54959 CCTCCAGGGTGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCATA 55008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328386309843840