Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq65532 241 4e-59 seq72083 228 2e-55 seq56894 194 5e-45 seq66950 170 6e-38 seq73955 168 2e-37 seq69198 163 8e-36 seq68591 143 8e-30 seq26852 116 1e-21 seq67167 100 8e-17 seq57833 96.9 1e-15 seq56815 87.8 5e-13 >seq65532 Length=34246 Score = 241 bits (266), Expect = 4e-59 Identities = 231/296 (78%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 20192 TATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTC 20251 ||||| ||||||| |||||||||||| ||||| | |||||||||||||| ||| |||| Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000 Query 20252 AACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTC 20311 |||||| |||||| ||||||||||||| ||||| ||||| || ||||| || | |||| Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060 Query 20312 GCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCC 20371 |||| || || | || ||||| || || || ||||||||||| || ||||| || Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120 Query 20372 CTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAAT 20431 | | || | || |||||||| ||| ||||||||||||| || | || |||||||| Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180 Query 20432 CTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 || || | || || ||||||||||| ||||||||||| ||||| || ||||| || Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 3236 >seq72083 Length=18787 Score = 228 bits (252), Expect = 2e-55 Identities = 246/326 (75%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || | ||||| ||||| || ||||| |||||| ||||||||||||| ||| Sbjct 7377 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTACCCGCTCATGGTTATTTT 7436 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 ||||| ||||| ||||||| ||| |||||| ||| || ||| |||||||| || | Sbjct 7437 GGACGACTGATCGTCCAATATGCTAATTTCAAAAATTCCCATTCGTTACACTTCATCTTA 7496 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 ||||| | ||| || ||||| || |||||| |||| || || | || ||||| || Sbjct 7497 GCTGCTTAGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 7556 Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401 || || ||||||||||| || ||||| || | | || | | ||| |||| ||| || Sbjct 7557 AACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGTGTAATTAAT 7616 Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461 ||||||||||| || | || |||||||| || || | || | ||||||||||| ||| Sbjct 7617 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAATTTATGCATGAACGTAAT 7676 Query 20462 GCTCATAACTTCCCACTTGACCTTGC 20487 |||||||| ||||| || ||||| || Sbjct 7677 GCTCATAATTTCCCTCTAGACCTAGC 7702 Score = 100 bits (110), Expect = 8e-17 Identities = 217/316 (69%), Gaps = 9/316 (3%) Strand=Plus/Plus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | ||| | ||| ||||||||||| |||| |||||||| ||||||| Sbjct 6633 TAACTGGATAACTAGCATCAAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 6692 Query 19570 TCCGTGTCTCCTTG-CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCTCCACCAG 19628 ||| || ||| | || || | || |||| ||| |||||||| ||||| |||| Sbjct 6693 CCCGAC-CTTATTGACCGCAACTTCCATATTTATTACTGCCTTCATTGCTGCTCCTCCAG 6751 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATC 19687 | || |||||||| || || | |||| | || | | | || ||||| |||||||| || Sbjct 6752 TAGATATTGATGGTATTCGTGTACCCATTTCATG-ATCTTTACTTTACGGAAACAATATT 6810 Query 19688 ATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 19745 || || | ||| | ||| | | ||| || || || | ||||| |||||||| | Sbjct 6811 ATTTCAGT-GCCATTATTCTTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCT 6867 Query 19746 GGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 19805 |||||| || ||||||||||| | || ||||| || || | |||| | || Sbjct 6868 GGGAAGTGGCATCCGTTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTC 6927 Query 19806 TCCACTTCCTCATTGG 19821 | |||||| | |||| Sbjct 6928 TACACTTCTTACTTGG 6943 >seq56894 Length=101133 Score = 194 bits (214), Expect = 5e-45 Identities = 256/349 (73%), Gaps = 6/349 (2%) Strand=Plus/Plus Query 19862 CGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCT 19921 || || || ||| | ||||||||| |||||| || || |||| |||||||| || | Sbjct 63392 CGGCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACC 63451 Query 19922 GCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGG 19980 || | ||||| | ||||||| | |||| || || || || |||| ||||||| | || Sbjct 63452 GCTAT-TTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 63510 Query 19981 TATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCA 20040 ||||| ||||| ||||||| |||| | |||||||| || || || ||||| || ||||| Sbjct 63511 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 63570 Query 20041 CCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCA 20100 | | || |||||| | || || ||||| || |||| || | |||||||||| ||||| Sbjct 63571 CTCATTTCACATGTTAGGCGTAGCTGGGGT--TCGGCGGCTTCTTATTCAGTGCTATGCA 63628 Query 20101 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACT 20159 ||||| |||| || | || | ||| || | || || || ||| | ||| | || Sbjct 63629 TGGTTC-CTTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATG 63687 Query 20160 ATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGC 20208 | ||||||| || || ||||| ||||| || ||||| ||||||||||| Sbjct 63688 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGC 63736 >seq66950 Length=22296 Score = 170 bits (188), Expect = 6e-38 Identities = 161/204 (79%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || | ||||| ||||| || ||||| |||||||||||||||||||| ||| Sbjct 3528 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 3587 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 || || |||||||||||||| ||| |||||| || |||||| ||||||||||||| Sbjct 3588 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAAATCCCGTTCATTACACTTCTTCCTA 3647 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 ||||| ||||| || ||||| || |||||| |||| || | | | || ||||| || Sbjct 3648 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGATATAGC-ACTATGGCTTTC 3706 Query 20342 AATCTGAACGGTTTCAACTTTAAC 20365 || || ||||||||||| || ||| Sbjct 3707 AACCTAAACGGTTTCAATTTCAAC 3730 >seq73955 Length=113899 Score = 168 bits (186), Expect = 2e-37 Identities = 189/253 (75%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 20215 TTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTT 20274 ||| ||||| || |||||||||||||| ||| |||||||||| | ||| ||||||| Sbjct 50342 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGTTACACTT 50283 Query 20275 CTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAAT 20334 |||||| ||||| ||||| || ||||| | |||||| |||| || || | || || Sbjct 50282 CTTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTAT 50223 Query 20335 GGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGT 20394 ||| || || || ||||||||||| || ||||| || | | || | | | |||||| Sbjct 50222 GGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTGT 50163 Query 20395 CATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGA 20454 ||| |||||| |||||| || | || |||||||| || || | || || |||||||| Sbjct 50162 AATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 50103 Query 20455 ACGGAATGCTCAT 20467 ||| ||| ||||| Sbjct 50102 ACGTAATACTCAT 50090 >seq69198 Length=26917 Score = 163 bits (180), Expect = 8e-36 Identities = 232/321 (72%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | ||||||| | ||| | || || || || ||| ||||||| | || ||||| Sbjct 7115 TTTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTC 7056 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| || || | |||| | |||||||| || || || ||||| || || ||| | || Sbjct 7055 TGGTACTTTTAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACTCATT 6996 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 ||| ||| | || || ||||| |||||||| || || |||||||| | ||||| ||||| Sbjct 6995 CCA-ATGTTGGGCGTAGCTGGGGTATTCGGCGGCTCCTTATTCAGTTCTATGCATGGTTC 6937 Query 20107 GCTTGTTACGTCCTCGCTTGTGCGTG-AGACTACTGAACAGGAAAGTCAGAACTATGGTT 20165 |||| || | || | ||| | | | || || ||| | ||| | || | ||| Sbjct 6936 -CTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAAGTT 6878 Query 20166 ACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGAC 20225 ||| ||||| ||||| ||| || ||||| ||||| || || |||||||| ||| | | Sbjct 6877 ACAGATTTGGTCAAGAGACAGAAACTTATAATATCGTTGCTGCACATGGTTATTTTAGCC 6818 Query 20226 GTTTGATCTTCCAATACGCTT 20246 | |||||||||||| | |||| Sbjct 6817 GATTGATCTTCCAACATGCTT 6797 >seq68591 Length=37818 Score = 143 bits (158), Expect = 8e-30 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20066 GGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT 20125 || |||||||| | || ||||||||| ||||| ||||| |||| || | || | || Sbjct 5549 GGGGTATTCGGCAGCTCCTAATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTT 5491 Query 20126 GTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGA 20184 | | | || || || ||| | ||| | || | ||||||| || || ||| | || Sbjct 5490 GATCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGTCAAAAGGA 5431 Query 20185 AGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGC 20244 ||| || ||||| |||||||||||| ||| ||| ||||| || ||||| |||||||| || Sbjct 5430 AGAAACTTATAATATCGTAGCCGCTAATGATTATTTTGGCCGATTGATATTCCAATATGC 5371 Query 20245 TTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 20295 | ||||||| || |||||| ||||||||||||| ||||| ||||| || Sbjct 5370 TAGTTTCAACGATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGT 5320 >seq26852 Length=33301 Score = 116 bits (128), Expect = 1e-21 Identities = 254/375 (68%), Gaps = 4/375 (1%) Strand=Plus/Minus Query 19610 TTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTT 19669 ||||||| | ||| ||||| || |||||||| || | |||||| | | || | | || Sbjct 11380 TTCATTGTTGTTCCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGG-ATCTTT 11322 Query 19670 -CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACT 19728 ||| | |||||||| || || || || | | | |||| | | || || | | Sbjct 11321 ACTTCACGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTT 11262 Query 19729 ACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACC 19788 ||||| |||||||||| | |||| || ||||||||||| | || || || || || Sbjct 11261 GCACTTTTACCCAATTTAGAAAGCGGCATCCATTGATGAATGGTTATATAATGGTGGTCC 11202 Query 19789 GTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTG 19848 | |||| | || | |||||| | |||| | | |||||| || | ||||| Sbjct 11201 TTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGTG 11142 Query 19849 GGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGT 19908 ||| ||||||| || || || ||| | ||||||||| |||||| || |||||||| | Sbjct 11141 GGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCTAT 11082 Query 19909 TGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATG 19967 || ||| || | | | ||||| | ||||||| | ||||| || || || | |||| Sbjct 11081 TGTAGCTGCTACCACTAT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTATGATG 11023 Query 19968 CTATGCCTTTGGGTA 19982 ||| || | |||| Sbjct 11022 GTATACCCTCTGGTA 11008 >seq67167 Length=42922 Score = 100 bits (110), Expect = 8e-17 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 |||||||| ||| ||||||||||||| || | ||||||||||| || || | || || Sbjct 34584 GGTCGTGTAATTAATACTTGGGCTGATATCATTAATCGTGCTAACCTTGGTATGGAAGTT 34525 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCT 20484 ||||||||||| ||||||||||| ||||| || ||||| Sbjct 34524 ATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCT 34487 >seq57833 Length=3807 Score = 96.9 bits (106), Expect = 1e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 19761 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 19820 ||||||||||| | || ||||| || || | |||| | || | |||||| | || Sbjct 197 TTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTA 138 Query 19821 GCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTT 19880 | | | ||||||||| || |||||||| ||||||| || | || ||| | |||| Sbjct 137 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTTTGGGTATGCGACCTT 78 Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTAC 19939 ||||| |||||| || || ||||| |||||||| || | || || ||||| | ||||| Sbjct 77 GGATTGTTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGT-TTTCTTGATCTAC 19 Query 19940 CCGTTTGGTCAGGGTAG 19956 || | ||||| || || Sbjct 18 CCAATCGGTCAAGGAAG 2 >seq56815 Length=14128 Score = 87.8 bits (96), Expect = 5e-13 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| ||||| |||||||| ||||||| ||| || ||| Sbjct 3 ACCGAAAACCGTCTTTACGTTGGATGGTTTGGTGTTTTGATGATCCCG-ACCTTATTGAC 61 Query 19586 GCCACCATCTG-CTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || | |||| || |||| || |||||||| ||||| ||||| || |||||||| || Sbjct 62 CGCAACTTCTGTATTTGTTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 121 Query 19645 CCGCGAACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703 || |||| || || || | | || ||||| |||||||| || || || || ||| | Sbjct 122 TCGTGAACTTGTTTCTGG-ATCTTTACTTTACGGAAACAATATTATTTCAGGTGCCATTA 180 Query 19704 TTCC 19707 |||| Sbjct 181 TTCC 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148688646244716