Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq65532 241 4e-59
seq72083 228 2e-55
seq56894 194 5e-45
seq66950 170 6e-38
seq73955 168 2e-37
seq69198 163 8e-36
seq68591 143 8e-30
seq26852 116 1e-21
seq67167 100 8e-17
seq57833 96.9 1e-15
seq56815 87.8 5e-13
>seq65532
Length=34246
Score = 241 bits (266), Expect = 4e-59
Identities = 231/296 (78%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 20192 TATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTC 20251
||||| ||||||| |||||||||||| ||||| | |||||||||||||| ||| ||||
Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000
Query 20252 AACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTC 20311
|||||| |||||| ||||||||||||| ||||| ||||| || ||||| || | ||||
Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060
Query 20312 GCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCC 20371
|||| || || | || ||||| || || || ||||||||||| || ||||| ||
Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120
Query 20372 CTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAAT 20431
| | || | || |||||||| ||| ||||||||||||| || | || ||||||||
Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180
Query 20432 CTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487
|| || | || || ||||||||||| ||||||||||| ||||| || ||||| ||
Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 3236
>seq72083
Length=18787
Score = 228 bits (252), Expect = 2e-55
Identities = 246/326 (75%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221
||||||| || | ||||| ||||| || ||||| |||||| ||||||||||||| |||
Sbjct 7377 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTACCCGCTCATGGTTATTTT 7436
Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281
||||| ||||| ||||||| ||| |||||| ||| || ||| |||||||| || |
Sbjct 7437 GGACGACTGATCGTCCAATATGCTAATTTCAAAAATTCCCATTCGTTACACTTCATCTTA 7496
Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341
||||| | ||| || ||||| || |||||| |||| || || | || ||||| ||
Sbjct 7497 GCTGCTTAGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 7556
Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401
|| || ||||||||||| || ||||| || | | || | | ||| |||| ||| ||
Sbjct 7557 AACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGTGTAATTAAT 7616
Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461
||||||||||| || | || |||||||| || || | || | ||||||||||| |||
Sbjct 7617 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAATTTATGCATGAACGTAAT 7676
Query 20462 GCTCATAACTTCCCACTTGACCTTGC 20487
|||||||| ||||| || ||||| ||
Sbjct 7677 GCTCATAATTTCCCTCTAGACCTAGC 7702
Score = 100 bits (110), Expect = 8e-17
Identities = 217/316 (69%), Gaps = 9/316 (3%)
Strand=Plus/Plus
Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569
||||||| | ||| | ||| ||||||||||| |||| |||||||| |||||||
Sbjct 6633 TAACTGGATAACTAGCATCAAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 6692
Query 19570 TCCGTGTCTCCTTG-CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCTCCACCAG 19628
||| || ||| | || || | || |||| ||| |||||||| ||||| ||||
Sbjct 6693 CCCGAC-CTTATTGACCGCAACTTCCATATTTATTACTGCCTTCATTGCTGCTCCTCCAG 6751
Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATC 19687
| || |||||||| || || | |||| | || | | | || ||||| |||||||| ||
Sbjct 6752 TAGATATTGATGGTATTCGTGTACCCATTTCATG-ATCTTTACTTTACGGAAACAATATT 6810
Query 19688 ATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTT 19745
|| || | ||| | ||| | | ||| || || || | ||||| |||||||| |
Sbjct 6811 ATTTCAGT-GCCATTATTCTTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCT 6867
Query 19746 GGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 19805
|||||| || ||||||||||| | || ||||| || || | |||| | ||
Sbjct 6868 GGGAAGTGGCATCCGTTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTC 6927
Query 19806 TCCACTTCCTCATTGG 19821
| |||||| | ||||
Sbjct 6928 TACACTTCTTACTTGG 6943
>seq56894
Length=101133
Score = 194 bits (214), Expect = 5e-45
Identities = 256/349 (73%), Gaps = 6/349 (2%)
Strand=Plus/Plus
Query 19862 CGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCT 19921
|| || || ||| | ||||||||| |||||| || || |||| |||||||| || |
Sbjct 63392 CGGCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACC 63451
Query 19922 GCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGG 19980
|| | ||||| | ||||||| | |||| || || || || |||| ||||||| | ||
Sbjct 63452 GCTAT-TTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 63510
Query 19981 TATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCA 20040
||||| ||||| ||||||| |||| | |||||||| || || || ||||| || |||||
Sbjct 63511 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 63570
Query 20041 CCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCA 20100
| | || |||||| | || || ||||| || |||| || | |||||||||| |||||
Sbjct 63571 CTCATTTCACATGTTAGGCGTAGCTGGGGT--TCGGCGGCTTCTTATTCAGTGCTATGCA 63628
Query 20101 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACT 20159
||||| |||| || | || | ||| || | || || || ||| | ||| | ||
Sbjct 63629 TGGTTC-CTTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATG 63687
Query 20160 ATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGC 20208
| ||||||| || || ||||| ||||| || ||||| |||||||||||
Sbjct 63688 AAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGC 63736
>seq66950
Length=22296
Score = 170 bits (188), Expect = 6e-38
Identities = 161/204 (79%), Gaps = 1/204 (0%)
Strand=Plus/Plus
Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221
||||||| || | ||||| ||||| || ||||| |||||||||||||||||||| |||
Sbjct 3528 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 3587
Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281
|| || |||||||||||||| ||| |||||| || |||||| |||||||||||||
Sbjct 3588 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAAATCCCGTTCATTACACTTCTTCCTA 3647
Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341
||||| ||||| || ||||| || |||||| |||| || | | | || ||||| ||
Sbjct 3648 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGATATAGC-ACTATGGCTTTC 3706
Query 20342 AATCTGAACGGTTTCAACTTTAAC 20365
|| || ||||||||||| || |||
Sbjct 3707 AACCTAAACGGTTTCAATTTCAAC 3730
>seq73955
Length=113899
Score = 168 bits (186), Expect = 2e-37
Identities = 189/253 (75%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 20215 TTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTT 20274
||| ||||| || |||||||||||||| ||| |||||||||| | ||| |||||||
Sbjct 50342 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGTTACACTT 50283
Query 20275 CTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAAT 20334
|||||| ||||| ||||| || ||||| | |||||| |||| || || | || ||
Sbjct 50282 CTTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTAT 50223
Query 20335 GGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGT 20394
||| || || || ||||||||||| || ||||| || | | || | | | ||||||
Sbjct 50222 GGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTGT 50163
Query 20395 CATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGA 20454
||| |||||| |||||| || | || |||||||| || || | || || ||||||||
Sbjct 50162 AATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 50103
Query 20455 ACGGAATGCTCAT 20467
||| ||| |||||
Sbjct 50102 ACGTAATACTCAT 50090
>seq69198
Length=26917
Score = 163 bits (180), Expect = 8e-36
Identities = 232/321 (72%), Gaps = 4/321 (1%)
Strand=Plus/Minus
Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986
||||| | ||||||| | ||| | || || || || ||| ||||||| | || |||||
Sbjct 7115 TTTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATCTC 7056
Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046
||||| || || | |||| | |||||||| || || || ||||| || || ||| | ||
Sbjct 7055 TGGTACTTTTAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACTCATT 6996
Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106
||| ||| | || || ||||| |||||||| || || |||||||| | ||||| |||||
Sbjct 6995 CCA-ATGTTGGGCGTAGCTGGGGTATTCGGCGGCTCCTTATTCAGTTCTATGCATGGTTC 6937
Query 20107 GCTTGTTACGTCCTCGCTTGTGCGTG-AGACTACTGAACAGGAAAGTCAGAACTATGGTT 20165
|||| || | || | ||| | | | || || ||| | ||| | || | |||
Sbjct 6936 -CTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAAGTT 6878
Query 20166 ACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGAC 20225
||| ||||| ||||| ||| || ||||| ||||| || || |||||||| ||| | |
Sbjct 6877 ACAGATTTGGTCAAGAGACAGAAACTTATAATATCGTTGCTGCACATGGTTATTTTAGCC 6818
Query 20226 GTTTGATCTTCCAATACGCTT 20246
| |||||||||||| | ||||
Sbjct 6817 GATTGATCTTCCAACATGCTT 6797
>seq68591
Length=37818
Score = 143 bits (158), Expect = 8e-30
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 20066 GGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT 20125
|| |||||||| | || ||||||||| ||||| ||||| |||| || | || | ||
Sbjct 5549 GGGGTATTCGGCAGCTCCTAATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTT 5491
Query 20126 GTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGA 20184
| | | || || || ||| | ||| | || | ||||||| || || ||| | ||
Sbjct 5490 GATCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGTCAAAAGGA 5431
Query 20185 AGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGC 20244
||| || ||||| |||||||||||| ||| ||| ||||| || ||||| |||||||| ||
Sbjct 5430 AGAAACTTATAATATCGTAGCCGCTAATGATTATTTTGGCCGATTGATATTCCAATATGC 5371
Query 20245 TTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 20295
| ||||||| || |||||| ||||||||||||| ||||| ||||| ||
Sbjct 5370 TAGTTTCAACGATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGT 5320
>seq26852
Length=33301
Score = 116 bits (128), Expect = 1e-21
Identities = 254/375 (68%), Gaps = 4/375 (1%)
Strand=Plus/Minus
Query 19610 TTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTT 19669
||||||| | ||| ||||| || |||||||| || | |||||| | | || | | ||
Sbjct 11380 TTCATTGTTGTTCCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGG-ATCTTT 11322
Query 19670 -CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACT 19728
||| | |||||||| || || || || | | | |||| | | || || | |
Sbjct 11321 ACTTCACGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTT 11262
Query 19729 ACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACC 19788
||||| |||||||||| | |||| || ||||||||||| | || || || || ||
Sbjct 11261 GCACTTTTACCCAATTTAGAAAGCGGCATCCATTGATGAATGGTTATATAATGGTGGTCC 11202
Query 19789 GTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTG 19848
| |||| | || | |||||| | |||| | | |||||| || | |||||
Sbjct 11201 TTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGTG 11142
Query 19849 GGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGT 19908
||| ||||||| || || || ||| | ||||||||| |||||| || |||||||| |
Sbjct 11141 GGAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCTAT 11082
Query 19909 TGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATG 19967
|| ||| || | | | ||||| | ||||||| | ||||| || || || | ||||
Sbjct 11081 TGTAGCTGCTACCACTAT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTATGATG 11023
Query 19968 CTATGCCTTTGGGTA 19982
||| || | ||||
Sbjct 11022 GTATACCCTCTGGTA 11008
>seq67167
Length=42922
Score = 100 bits (110), Expect = 8e-17
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446
|||||||| ||| ||||||||||||| || | ||||||||||| || || | || ||
Sbjct 34584 GGTCGTGTAATTAATACTTGGGCTGATATCATTAATCGTGCTAACCTTGGTATGGAAGTT 34525
Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCT 20484
||||||||||| ||||||||||| ||||| || |||||
Sbjct 34524 ATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCT 34487
>seq57833
Length=3807
Score = 96.9 bits (106), Expect = 1e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 19761 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 19820
||||||||||| | || ||||| || || | |||| | || | |||||| | ||
Sbjct 197 TTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTA 138
Query 19821 GCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTT 19880
| | | ||||||||| || |||||||| ||||||| || | || ||| | ||||
Sbjct 137 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTTTGGGTATGCGACCTT 78
Query 19881 GGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTAC 19939
||||| |||||| || || ||||| |||||||| || | || || ||||| | |||||
Sbjct 77 GGATTGTTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGT-TTTCTTGATCTAC 19
Query 19940 CCGTTTGGTCAGGGTAG 19956
|| | ||||| || ||
Sbjct 18 CCAATCGGTCAAGGAAG 2
>seq56815
Length=14128
Score = 87.8 bits (96), Expect = 5e-13
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585
||| | ||||||||||| ||||| |||||||| ||||||| ||| || |||
Sbjct 3 ACCGAAAACCGTCTTTACGTTGGATGGTTTGGTGTTTTGATGATCCCG-ACCTTATTGAC 61
Query 19586 GCCACCATCTG-CTTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644
|| | |||| || |||| || |||||||| ||||| ||||| || |||||||| ||
Sbjct 62 CGCAACTTCTGTATTTGTTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 121
Query 19645 CCGCGAACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703
|| |||| || || || | | || ||||| |||||||| || || || || ||| |
Sbjct 122 TCGTGAACTTGTTTCTGG-ATCTTTACTTTACGGAAACAATATTATTTCAGGTGCCATTA 180
Query 19704 TTCC 19707
||||
Sbjct 181 TTCC 184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148688646244716
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