Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq65532 239 1e-58 seq72083 237 5e-58 seq66950 176 1e-39 seq56894 176 1e-39 seq73955 172 2e-38 seq68591 125 2e-24 seq57833 114 4e-21 seq26852 107 6e-19 seq67167 105 2e-18 seq56815 87.8 5e-13 >seq65532 Length=34246 Score = 239 bits (264), Expect = 1e-58 Identities = 231/297 (78%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 29320 TATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTC 29379 ||||| ||||||| |||||| ||||| ||||| | |||||||||||||||||| |||| Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000 Query 29380 AATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTC 29439 || ||| |||||| ||||||||||||| ||||| ||||| || ||||| || | |||| Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060 Query 29440 GCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCG 29499 |||| || || | || ||||| || || || |||||||| || || ||||| || Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120 Query 29500 CTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAAC 29559 | | || | || |||||||| |||||||||||||||||| | | || || |||||| Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180 Query 29560 CTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 || || | ||||| |||||||| |||||||||||||| ||||| || || || ||| Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCT 3237 >seq72083 Length=18787 Score = 237 bits (262), Expect = 5e-58 Identities = 250/329 (76%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || | ||||| ||||| |||||||| |||||| ||||||| ||||| ||| Sbjct 7377 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTACCCGCTCATGGTTATTTT 7436 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 ||||| ||||| ||||||||||| |||||| ||| || ||| |||||||| || | Sbjct 7437 GGACGACTGATCGTCCAATATGCTAATTTCAAAAATTCCCATTCGTTACACTTCATCTTA 7496 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 ||||| | ||| || ||||| || |||||| |||| || || | || ||||| || Sbjct 7497 GCTGCTTAGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 7556 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || || |||||||| || || ||||| || | | || | | ||| |||| |||||| Sbjct 7557 AACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTTGTGTAATTAAT 7616 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 |||||||||||| | | || || |||||||| || | ||| | |||||||| |||||| Sbjct 7617 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAATTTATGCATGAACGTAAT 7676 Query 29590 GCTCATAACTTCCCACTTGATCTGGCTAC 29618 |||||||| ||||| || || || ||||| Sbjct 7677 GCTCATAATTTCCCTCTAGACCTAGCTAC 7705 Score = 84.2 bits (92), Expect = 6e-12 Identities = 211/315 (67%), Gaps = 7/315 (2%) Strand=Plus/Plus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | ||| | ||| ||||||||||| |||| |||||||| ||||||| Sbjct 6633 TAACTGGATAACTAGCATCAAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 6692 Query 28698 TCCGTGTCTCCTTG-CAGCCACCATCTGCTTCATTATTGCATTCATTGCGGCACCACCAG 28756 ||| || ||| | || || | || |||| ||| |||||||| || || |||| Sbjct 6693 CCCGAC-CTTATTGACCGCAACTTCCATATTTATTACTGCCTTCATTGCTGCTCCTCCAG 6751 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || | ||| | | || | | || || |||||||| || | Sbjct 6752 TAGATATTGATGGTATTCGTGTACCCATTTCATGATCTTTACTTTACGGAAACAATATTA 6811 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || | ||| | | | | | ||| || || || | ||||| |||||||| || Sbjct 6812 TTTCAGT-GCCATTATTCTTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCTG 6868 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 ||||| || ||||||||||| | || ||||| || || | |||| | || | Sbjct 6869 GGAAGTGGCATCCGTTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCT 6928 Query 28935 CCACTTCCTCATTGG 28949 |||||| | |||| Sbjct 6929 ACACTTCTTACTTGG 6943 >seq66950 Length=22296 Score = 176 bits (194), Expect = 1e-39 Identities = 162/204 (79%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || | ||||| ||||| |||||||| |||||||||||||| ||||| ||| Sbjct 3528 GGTTACAGATTCAGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 3587 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || |||||||||||||||||| ||||||||| |||||| ||||||||||||| Sbjct 3588 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAAATCCCGTTCATTACACTTCTTCCTA 3647 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 ||||| ||||| || ||||| || |||||| |||| || | | | || ||||| || Sbjct 3648 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGATATAGC-ACTATGGCTTTC 3706 Query 29470 AATCTGAACGGTTTTAACTTTAAC 29493 || || |||||||| || || ||| Sbjct 3707 AACCTAAACGGTTTCAATTTCAAC 3730 >seq56894 Length=101133 Score = 176 bits (194), Expect = 1e-39 Identities = 250/348 (72%), Gaps = 4/348 (1%) Strand=Plus/Plus Query 28990 CGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCT 29049 || || || ||| | || |||||| ||| ||||| ||||||| || ||||| || | Sbjct 63392 CGGCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACC 63451 Query 29050 GCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGT 29109 || ||||| | |||||||| || ||||||| |||| || | |||||| | || Sbjct 63452 GCTATTTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 63511 Query 29110 ATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCAC 29169 || || || || ||||||| |||| | || ||||| || || || ||||| || |||||| Sbjct 63512 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 63571 Query 29170 CCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCAC 29229 | || |||||| | ||||| ||||| || |||| |||| |||| ||||| ||||| Sbjct 63572 TCATTTCACATGTTAGGCGTAGCTGGGGT--TCGGCGGCTTCTTATTCAGTGCTATGCAT 63629 Query 29230 GGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTA 29288 ||||| | || || || | | ||| || | || || || ||| | ||| || | Sbjct 63630 GGTTCCTTGGTAACTTC-TAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGA 63688 Query 29289 TGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGC 29336 ||||||| || || ||||| ||||| |||||||| ||||||||||| Sbjct 63689 AGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGC 63736 >seq73955 Length=113899 Score = 172 bits (190), Expect = 2e-38 Identities = 190/253 (75%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 29343 TTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTT 29402 ||| ||||| || |||||||||||||||||| |||||| ||| | ||| ||||||| Sbjct 50342 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGTTACACTT 50283 Query 29403 CTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAAT 29462 |||||| ||||| ||||| || ||||| | |||||| |||| || || | || || Sbjct 50282 CTTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTAT 50223 Query 29463 GGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGT 29522 ||| || || || |||||||| || || ||||| || | | || | | | |||||| Sbjct 50222 GGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTGT 50163 Query 29523 CATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGA 29582 |||||||||| ||||||| | | || || |||||||| || | ||||| |||||||| Sbjct 50162 AATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 50103 Query 29583 GCGTAATGCTCAT 29595 |||||| ||||| Sbjct 50102 ACGTAATACTCAT 50090 >seq68591 Length=37818 Score = 125 bits (138), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29194 GGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTT 29253 || || ||||| |||| ||| ||||| ||||| ||||| | || || || | | || Sbjct 5549 GGGGTATTCGGCAGCTCCTAATTCAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTT 5491 Query 29254 GTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGA 29312 | | | || || || ||| | | | || | ||||||| || || ||| | || Sbjct 5490 GATCAGGGAAACCACAGAAAATGAATATGCTAATGAAGGTTACAGATTCGGTCAAAAGGA 5431 Query 29313 AGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGC 29372 ||| |||||||| |||||||||||| | | ||| ||||| || ||||| ||||||||||| Sbjct 5430 AGAAACTTATAATATCGTAGCCGCTAATGATTATTTTGGCCGATTGATATTCCAATATGC 5371 Query 29373 TTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 29423 | |||||| || |||||| ||||||||||||| ||||| ||||| || Sbjct 5370 TAGTTTCAACGATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGT 5320 >seq57833 Length=3807 Score = 114 bits (126), Expect = 4e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 28889 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 28948 ||||||||||| | || ||||| || || | |||| | || | |||||| | || Sbjct 197 TTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTA 138 Query 28949 GCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGT 29008 | || | ||||||||| || |||||||| ||||||| || | || ||| | || | Sbjct 137 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTTTGGGTATGCGACCTT 78 Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| ||||| |||||||| || ||||| || | || |||||| | |||||| Sbjct 77 GGATTGTTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATCTACC 18 Query 29069 CATTCGGTCAAGG 29081 || |||||||||| Sbjct 17 CAATCGGTCAAGG 5 >seq26852 Length=33301 Score = 107 bits (118), Expect = 6e-19 Identities = 230/344 (67%), Gaps = 0/344 (0%) Strand=Plus/Minus Query 28738 TTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTT 28797 ||||||| | || ||||| || |||||||| || | ||||| | |||| | | Sbjct 11380 TTCATTGTTGTTCCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGGATCTTTA 11321 Query 28798 CTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTA 28857 || | |||||||| || || || || | | | | || | | || || | | Sbjct 11320 CTTCACGGAAACAATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTTG 11261 Query 28858 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 28917 ||||| |||||||||| | |||| || ||||||||||| | || || || || || Sbjct 11260 CACTTTTACCCAATTTAGAAAGCGGCATCCATTGATGAATGGTTATATAATGGTGGTCCT 11201 Query 28918 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 28977 | |||| | || | |||||| | |||| || | |||||| || | |||||| Sbjct 11200 TATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGTGG 11141 Query 28978 GAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTC 29037 || ||||||| || || || ||| | || |||||| ||| ||||| || ||||| | Sbjct 11140 GAGCTTAGCTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCTATT 11081 Query 29038 GCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGG 29081 | ||| || | | ||||| | |||||||| |||||||||| Sbjct 11080 GTAGCTGCTACCACTATTTTCTTGATCTACCCAATCGGTCAAGG 11037 >seq67167 Length=42922 Score = 105 bits (116), Expect = 2e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| |||||||||||||||||| | | ||||| |||||||| || | ||||| Sbjct 34584 GGTCGTGTAATTAATACTTGGGCTGATATCATTAATCGTGCTAACCTTGGTATGGAAGTT 34525 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCT 29612 |||||||| |||||||||||||| ||||| || || || Sbjct 34524 ATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCT 34487 >seq56815 Length=14128 Score = 87.8 bits (96), Expect = 5e-13 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| ||||| |||||||| ||||||| ||| || ||| Sbjct 3 ACCGAAAACCGTCTTTACGTTGGATGGTTTGGTGTTTTGATGATCCCG-ACCTTATTGAC 61 Query 28714 GCCACCATCTG-CTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || | |||| || |||| || |||||||| || || ||||| || |||||||| || Sbjct 62 CGCAACTTCTGTATTTGTTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 121 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCC 28827 || |||| ||| ||||| | | || || |||||||| || || || || ||| Sbjct 122 TCGTGAACTTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCAGGTGCC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146527483354492