Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq73807 89.7 5e-13 seq72241 86.0 6e-12 >seq73807 Length=69832 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | ||||| || || || || ||||| | ||| | ||| || Sbjct 38717 AACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTCCTGCCATCCTC 38776 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || || | | |||| || | ||||||||||||||| || ||||| || || Sbjct 38777 GAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTG 38836 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| ||||| | || | |||||| | |||||| || | || | || || Sbjct 38837 AATTTTTGCTTTCACATTATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATTGTCTT 38896 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || || || || | |||||| |||||| || Sbjct 38897 CCCTGTAAGTGTCTTCACGAAAATTTGCATGCCT 38930 >seq72241 Length=55963 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 ||||| |||| ||| | | ||||| ||||||||||| || || ||| | ||||| Sbjct 39960 CGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT-AGAGTACGACC 40018 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||||| | ||| || |||| | |||| || | |||||||| ||||| || |||||||| Sbjct 40019 GTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTT 40078 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| ||| ||| || | | || | ||||| | || || || | || | Sbjct 40079 ATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAAT 40138 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || || || | ||||||||||| Sbjct 40139 AGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476138747232720