Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq73807 89.7 5e-13
seq72241 86.0 6e-12
>seq73807
Length=69832
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/214 (69%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
|||||| || | | | ||||| || || || || ||||| | ||| | ||| ||
Sbjct 38717 AACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTCCTGCCATCCTC 38776
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|||||| || || | | |||| || | ||||||||||||||| || ||||| || ||
Sbjct 38777 GAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGGAATTCCTTCCTTGTCCTG 38836
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
||||||| ||||| | || | |||||| | |||||| || | || | || ||
Sbjct 38837 AATTTTTGCTTTCACATTATCAATAGTATCTGAGCTCTCCACCTCCAAAGTGATTGTCTT 38896
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127
|| || || || || | |||||| |||||| ||
Sbjct 38897 CCCTGTAAGTGTCTTCACGAAAATTTGCATGCCT 38930
>seq72241
Length=55963
Score = 86.0 bits (94), Expect = 6e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967
||||| |||| ||| | | ||||| ||||||||||| || || ||| | |||||
Sbjct 39960 CGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT-AGAGTACGACC 40018
Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027
||||| | ||| || |||| | |||| || | |||||||| ||||| || ||||||||
Sbjct 40019 GTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCTTT 40078
Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087
||| ||| ||| || | | || | ||||| | || || || | || |
Sbjct 40079 ATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAACCTCAAGAGTAAT 40138
Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||||||||| || || || | |||||||||||
Sbjct 40139 AGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476138747232720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |