Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq65811 104 2e-17
seq42370 91.5 1e-13
seq73986 87.8 2e-12
seq72241 86.0 6e-12
seq67817 84.2 2e-11
>seq65811
Length=66007
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| || || || |||||||| | |||||| ||||||| || | |
Sbjct 55235 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACGCTCGAAGTTGAGAGCTCC 55176
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | ||||| |||||| || || || || || || || || |||
Sbjct 55175 GACACCATCGACAACGTAAAGGCTAAAATTCAAGACAAGGAAGGCATTCCACCAGACCAG 55116
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||| | || | || ||| || || ||||| || | | | | ||| ||||||
Sbjct 55115 CAAAGATTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAAT 55056
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||||||| ||||||||| |||| || |||
Sbjct 55055 ATTCAAAAGGAATCCACCCTTCACTTGGTG 55026
>seq42370
Length=41228
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| ||||| |||||||||| |||| || |||| || || |
Sbjct 9978 ATGCAGATATTTGTTAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTTGAGAGTTCC 10037
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| ||||| || | || || |||||| ||||| || || || || || || |||
Sbjct 10038 GACACTATTGACAACGTCAAGGCTAAAATTCAGGATAAGGAAGGGATCCCTCCGGACCAG 10097
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||||| ||||| | | || || ||| | || |||| | | | | ||||||||||
Sbjct 10098 CAAAGGCTCATCTTTGCTGGGAAGCAATTGGAGGATGGCCGGACTCTTGCCGATTACAAT 10157
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389
||||||||||| || ||| ||||| | || || ||
Sbjct 10158 ATTCAAAAAGAGTCGACCCTTCATCTCGTCTTGAG 10192
>seq73986
Length=64159
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/145 (74%), Gaps = 1/145 (1%)
Strand=Plus/Minus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
|||||||| ||||| || ||||||||||| ||||| |||| | || || ||| | |||
Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112
Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387
|||| | | | | || || ||||| || |||||||| || |||| || || ||
Sbjct 17111 GATGGCCGTACTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 17052
Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411
|| | |||||||||| ||||||||
Sbjct 17051 AGGCTTAGAGGAGGAACAATGATCA 17027
>seq72241
Length=55963
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| |||| || ||| | ||||| | || || |||
Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|||||||| || | || || ||| ||| ||||| || || || || || ||||||
Sbjct 40342 GATACTATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCTGATCAG 40283
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | || |||| || ||| || || || ||||| | ||||| | |||||||||
Sbjct 40282 CAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAAT 40223
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389
||||| || || || ||| | ||| | || || ||
Sbjct 40222 ATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAG 40188
>seq67817
Length=4127
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/208 (70%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230
||| ||| | | || || ||||| | || || || | ||||| | || |||||| |
Sbjct 1617 CAAAATGTAGATCTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTTGAGGTCGAATC 1558
Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290
| | |||| || || | || || |||||| | || || ||||| || || || ||
Sbjct 1557 CTCCAATACCATTGACAATGTCAAGGCCAAAATTTCGGACAAGGAGGGCATCCCACCAGA 1498
Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATT 25349
||||| | ||||| | || ||| || ||||||||||| | |||| | ||| || |
Sbjct 1497 CCAGCAGCGTCTCATCTTCGCCGGGAAGCAACTCGAAGACTACAGAACACT-AGCTGACT 1439
Query 25350 ACAATATTCAAAAAGAATCCACCATTCA 25377
|||| || || || ||||||||||||||
Sbjct 1438 ACAACATCCAGAAGGAATCCACCATTCA 1411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444653189048640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |