Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq65811 104 2e-17 seq42370 91.5 1e-13 seq73986 87.8 2e-12 seq72241 86.0 6e-12 seq67817 84.2 2e-11 >seq65811 Length=66007 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || |||||||| | |||||| ||||||| || | | Sbjct 55235 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACCATCACGCTCGAAGTTGAGAGCTCC 55176 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | ||||| |||||| || || || || || || || || ||| Sbjct 55175 GACACCATCGACAACGTAAAGGCTAAAATTCAAGACAAGGAAGGCATTCCACCAGACCAG 55116 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| || || ||||| || | | | | ||| |||||| Sbjct 55115 CAAAGATTGATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTACAAT 55056 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||||| ||||||||| |||| || ||| Sbjct 55055 ATTCAAAAGGAATCCACCCTTCACTTGGTG 55026 >seq42370 Length=41228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| |||||||||| |||| || |||| || || | Sbjct 9978 ATGCAGATATTTGTTAAAACCCTAACCGGAAAGACGATTACTCTCGAGGTTGAGAGTTCC 10037 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || |||||| ||||| || || || || || || ||| Sbjct 10038 GACACTATTGACAACGTCAAGGCTAAAATTCAGGATAAGGAAGGGATCCCTCCGGACCAG 10097 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||| | | || || ||| | || |||| | | | | |||||||||| Sbjct 10098 CAAAGGCTCATCTTTGCTGGGAAGCAATTGGAGGATGGCCGGACTCTTGCCGATTACAAT 10157 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 ||||||||||| || ||| ||||| | || || || Sbjct 10158 ATTCAAAAAGAGTCGACCCTTCATCTCGTCTTGAG 10192 >seq73986 Length=64159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 |||||||| ||||| || ||||||||||| ||||| |||| | || || ||| | ||| Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| | | | | || || ||||| || |||||||| || |||| || || || Sbjct 17111 GATGGCCGTACTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 17052 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 || | |||||||||| |||||||| Sbjct 17051 AGGCTTAGAGGAGGAACAATGATCA 17027 >seq72241 Length=55963 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||| || ||| | ||||| | || || ||| Sbjct 40402 ATGCAAATTTTTGTCAAAACTCTAACAGGCAAAACCATCACTCTTGAGGTGGAAAGTTCT 40343 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || ||| ||| ||||| || || || || || |||||| Sbjct 40342 GATACTATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCTGATCAG 40283 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || |||| || ||| || || || ||||| | ||||| | ||||||||| Sbjct 40282 CAGCGCCTAATTTTCGCCGGGAAGCAGCTGGAAGACGGTAGAACCCTTGCGGATTACAAT 40223 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 ||||| || || || ||| | ||| | || || || Sbjct 40222 ATTCAGAAGGAGTCAACCCTACATCTTGTCTTGAG 40188 >seq67817 Length=4127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||| | | || || ||||| | || || || | ||||| | || |||||| | Sbjct 1617 CAAAATGTAGATCTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTTGAGGTCGAATC 1558 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | |||| || || | || || |||||| | || || ||||| || || || || Sbjct 1557 CTCCAATACCATTGACAATGTCAAGGCCAAAATTTCGGACAAGGAGGGCATCCCACCAGA 1498 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATT 25349 ||||| | ||||| | || ||| || ||||||||||| | |||| | ||| || | Sbjct 1497 CCAGCAGCGTCTCATCTTCGCCGGGAAGCAACTCGAAGACTACAGAACACT-AGCTGACT 1439 Query 25350 ACAATATTCAAAAAGAATCCACCATTCA 25377 |||| || || || |||||||||||||| Sbjct 1438 ACAACATCCAGAAGGAATCCACCATTCA 1411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444653189048640