Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq39070 244 2e-58 seq35021 244 2e-58 >seq39070 Length=11651 Score = 244 bits (270), Expect = 2e-58 Identities = 374/525 (71%), Gaps = 16/525 (3%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | ||| |||||||||||| || |||||||||||||| || Sbjct 7361 TGTTCCCAATTCAATACCCTCAGATTTGGGAAATGTAC-AAGAAGGCCGAGGCCTCTTTC 7419 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872 ||||| |||||||| ||||| ||| ||| ||| |||| | || | | Sbjct 7420 TGGACAGCCGAGGAAGTCGATCTCTCTCAGGACCTCCGCCAATGGGAAGCCCTAACTCCC 7479 Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 |||||||| || ||||||| ||||| |||||||||||| ||||| ||||| || || Sbjct 7480 GACGAGCGTCACTTCATCACTCACGTTCTCGCCTTTTTT-GCCGCTTCTGATGGTATTGT 7538 Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992 ||||| || |||||||| || |||||||| || ||| | ||||||| ||| || Sbjct 7539 TTTGGAGAATCTTGCCGGCCGATTCATGAAAGAAGTTCAAATTTCAGAGGCCCGTGCCTT 7598 Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052 |||||| || || || || ||||| || || ||||| || | || || || |||| Sbjct 7599 TTACGGCTTTCAAATTGCTATCGAGAATATTCACTCCGAGATGTATAGTCTATTGCTCGA 7658 Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||||| | ||||| | | ||||||| | |||||||| || || || || | || Sbjct 7659 GTCCTACATAAAGGATTCAGACGAGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCC 7718 Query 1456113 GTCGGTGAGGAAAA--AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 | ||| ||||| ||||| | ||||| | |||||| || ||| ||| Sbjct 7719 TT--GTGTTGAAAAGAAGGCCAATTGGGCACTTCGTTGGATC------GATGGC-TCGGA 7769 Query 1456171 A--CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 | |||||| ||||| |||||| |||||| | || ||||| || ||||||||||| || Sbjct 7770 ATCCTTTGCTGAGCGTGTCGTCGCCTTTGCTTGTGTTGAGGGAATATTTTTCTCGGGGAG 7829 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||| || || || |||||||| ||||| || || || |||||||| Sbjct 7830 TTTTTGTGCGATATTTTGGCTAAAGAAACGGGGGCTTATGCCCGG 7874 >seq35021 Length=73443 Score = 244 bits (270), Expect = 2e-58 Identities = 379/529 (72%), Gaps = 18/529 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| | ||| ||||| |||||| || ||||| ||||| ||||| Sbjct 66624 TGTTCCCAATTCAATACCCTCAGATTTGGGAGATGTAC-AAGAAGGCAGAGGCTTCCTTC 66566 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACA-CGGTCCACTGGGTGTCGCTGAGCGA 1455871 |||||||||||||||||||| || ||| | ||| | |||| | || | Sbjct 66565 TGGACCGCCGAGGAGGTCGATCTATCTCAGGACCTCCGTCAA-TGGGAAGCCCTCACTCC 66507 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 ||||||||| || ||||||| ||||| |||||||| || |||||| |||||||| | Sbjct 66506 CGACGAGCGTCACTTCATCACTCACGTTCTCGCCTTCTT-CGCCGCTTCTGATGGCATTG 66448 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTTG 1455990 | ||||| || ||||| || || |||||||| || || ||| || || || ||| Sbjct 66447 TTTTGGAGAATCTCGCCGGTCGATTCATGAAAGAAGTTCAGATTTCC-GAAGCCCGTGCC 66389 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 |||||||| ||||| ||||||||||| || || ||||| || | || ||| || || Sbjct 66388 TTTTACGGTTTCCAAATCGCCATCGAGAATATTCACTCCGAGATGTATAGTCTCTTGCTC 66329 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || | ||| | |||||| | |||||| || ||||||||||| ||||| || | Sbjct 66328 GAGTCTTACATAAAGGACTCCAATGAGAAGAACAGACTCTTTCGCGCAATCGAAACAATT 66269 Query 1456111 CCGT-CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG- 1456168 || | || ||| || |||||| | ||||| | |||||| || | |||| Sbjct 66268 CCTTGCGTTGA-AAAGAAGGCCAAATGGGCACTTCGTTGGATCGAC-------GGCTCGG 66217 Query 1456169 -ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCA 1456226 | ||||||||| || | |||| ||| || | ||||| || || ||||||||||| | Sbjct 66216 AATCCTTTGCCGAACGTATAGTCGCCTTCGCTTGTGTCGAAGGAATATTTTTCTCGGGGA 66157 Query 1456227 GTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||| ||||| || |||||| | ||||| || ||||| |||||||| || Sbjct 66156 GTTTTTGCGCGATATTTTGGTTAAAGAAACGTGGCCTTATGCCCGGACT 66108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7170162376342924