Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 244 2e-58
seq35021 244 2e-58
>seq39070
Length=11651
Score = 244 bits (270), Expect = 2e-58
Identities = 374/525 (71%), Gaps = 16/525 (3%)
Strand=Plus/Plus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| || | |||| | ||| |||||||||||| || |||||||||||||| ||
Sbjct 7361 TGTTCCCAATTCAATACCCTCAGATTTGGGAAATGTAC-AAGAAGGCCGAGGCCTCTTTC 7419
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGAC 1455872
||||| |||||||| ||||| ||| ||| ||| |||| | || | |
Sbjct 7420 TGGACAGCCGAGGAAGTCGATCTCTCTCAGGACCTCCGCCAATGGGAAGCCCTAACTCCC 7479
Query 1455873 GACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932
|||||||| || ||||||| ||||| |||||||||||| ||||| ||||| || ||
Sbjct 7480 GACGAGCGTCACTTCATCACTCACGTTCTCGCCTTTTTT-GCCGCTTCTGATGGTATTGT 7538
Query 1455933 GGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTT 1455992
||||| || |||||||| || |||||||| || ||| | ||||||| ||| ||
Sbjct 7539 TTTGGAGAATCTTGCCGGCCGATTCATGAAAGAAGTTCAAATTTCAGAGGCCCGTGCCTT 7598
Query 1455993 TTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGA 1456052
|||||| || || || || ||||| || || ||||| || | || || || ||||
Sbjct 7599 TTACGGCTTTCAAATTGCTATCGAGAATATTCACTCCGAGATGTATAGTCTATTGCTCGA 7658
Query 1456053 CACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112
||||| | ||||| | | ||||||| | |||||||| || || || || | ||
Sbjct 7659 GTCCTACATAAAGGATTCAGACGAGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCC 7718
Query 1456113 GTCGGTGAGGAAAA--AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170
| ||| ||||| ||||| | ||||| | |||||| || ||| |||
Sbjct 7719 TT--GTGTTGAAAAGAAGGCCAATTGGGCACTTCGTTGGATC------GATGGC-TCGGA 7769
Query 1456171 A--CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227
| |||||| ||||| |||||| |||||| | || ||||| || ||||||||||| ||
Sbjct 7770 ATCCTTTGCTGAGCGTGTCGTCGCCTTTGCTTGTGTTGAGGGAATATTTTTCTCGGGGAG 7829
Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272
||| || || || |||||||| ||||| || || || ||||||||
Sbjct 7830 TTTTTGTGCGATATTTTGGCTAAAGAAACGGGGGCTTATGCCCGG 7874
>seq35021
Length=73443
Score = 244 bits (270), Expect = 2e-58
Identities = 379/529 (72%), Gaps = 18/529 (3%)
Strand=Plus/Minus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| || | |||| | ||| ||||| |||||| || ||||| ||||| |||||
Sbjct 66624 TGTTCCCAATTCAATACCCTCAGATTTGGGAGATGTAC-AAGAAGGCAGAGGCTTCCTTC 66566
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACA-CGGTCCACTGGGTGTCGCTGAGCGA 1455871
|||||||||||||||||||| || ||| | ||| | |||| | || |
Sbjct 66565 TGGACCGCCGAGGAGGTCGATCTATCTCAGGACCTCCGTCAA-TGGGAAGCCCTCACTCC 66507
Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931
||||||||| || ||||||| ||||| |||||||| || |||||| |||||||| |
Sbjct 66506 CGACGAGCGTCACTTCATCACTCACGTTCTCGCCTTCTT-CGCCGCTTCTGATGGCATTG 66448
Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTTG 1455990
| ||||| || ||||| || || |||||||| || || ||| || || || |||
Sbjct 66447 TTTTGGAGAATCTCGCCGGTCGATTCATGAAAGAAGTTCAGATTTCC-GAAGCCCGTGCC 66389
Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050
|||||||| ||||| ||||||||||| || || ||||| || | || ||| || ||
Sbjct 66388 TTTTACGGTTTCCAAATCGCCATCGAGAATATTCACTCCGAGATGTATAGTCTCTTGCTC 66329
Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110
|| | ||| | |||||| | |||||| || ||||||||||| ||||| || |
Sbjct 66328 GAGTCTTACATAAAGGACTCCAATGAGAAGAACAGACTCTTTCGCGCAATCGAAACAATT 66269
Query 1456111 CCGT-CGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCG- 1456168
|| | || ||| || |||||| | ||||| | |||||| || | ||||
Sbjct 66268 CCTTGCGTTGA-AAAGAAGGCCAAATGGGCACTTCGTTGGATCGAC-------GGCTCGG 66217
Query 1456169 -ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCA 1456226
| ||||||||| || | |||| ||| || | ||||| || || ||||||||||| |
Sbjct 66216 AATCCTTTGCCGAACGTATAGTCGCCTTCGCTTGTGTCGAAGGAATATTTTTCTCGGGGA 66157
Query 1456227 GTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||| ||||| || |||||| | ||||| || ||||| |||||||| ||
Sbjct 66156 GTTTTTGCGCGATATTTTGGTTAAAGAAACGTGGCCTTATGCCCGGACT 66108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7170162376342924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |