Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq39070 194 2e-44 seq67281 116 5e-21 seq50219 116 5e-21 seq42762 116 5e-21 seq40763 116 5e-21 seq73464 96.9 5e-15 seq73106 84.2 3e-11 seq55707 84.2 3e-11 seq55706 84.2 3e-11 >seq39070 Length=11651 Score = 194 bits (214), Expect = 2e-44 Identities = 582/892 (65%), Gaps = 16/892 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| ||||| ||||| | ||||| || |||||||| || || | ||| || Sbjct 8225 TTTTGATATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAAC 8166 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| |||| ||||| || ||| ||| ||||| | |||| || || | | Sbjct 8165 TCCATCCAATCGAACGGGTTCTGAACATCATACATTTTTCCATATCCCAAAGCTCCCAGC 8106 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 ||||| |||||||||||||| ||||| |||| | || | ||||| || | ||| Sbjct 8105 AATCTGTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCAGT 8046 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT- 39564 | ||||| || || | ||||| || || || || || || || | | || Sbjct 8045 GCACAGGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACGATT 7986 Query 39565 -CGATGTTACTACCTCATCACTCGG---TGGATGCAATAAA-TGTTTAAACATTAAGCAG 39619 | || | || || || ||| | || ||| | | ||| | | ||||||| Sbjct 7985 CCCCTGATTCTT--TCCTCGCTCAGCTTTGACCGCAGCAGACTGT----AGAGTAAGCAG 7932 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 || ||||||||||| ||||| ||||||| | |||||| ||||| || || || | ||| Sbjct 7931 GCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCG 7872 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||| || || || || || ||||||||||| ||| |||| || || || || || Sbjct 7871 GGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATT 7812 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC--ATTATGTATCC 39797 || || || ||||| || || | | | ||| | || | | || |||| Sbjct 7811 CCCTCAACACAAGCAAAGGCGAC--GACACGCTCAGCAAAGGATTCCGAGCCATCGATCC 7754 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | ||||||||| || ||||| | |||||||| || || || || ||| ||||| Sbjct 7753 AACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGA 7694 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 | ||| || || || ||| || | || | || | || ||||||||||| || | Sbjct 7693 GCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATCTCGG 7634 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 | || || || || || || || ||||| |||||||| | || || | |||||| | Sbjct 7633 AGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATTTGAA 7574 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 | ||| |||| | || | ||| || || || |||||| ||||||||||| Sbjct 7573 CTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCAAAAA 7514 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGA 40097 | || | || || | || || | || ||||| || | | ||| | || Sbjct 7513 AGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGGCGGA 7454 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 || | || | ||| ||||| || |||||||| || || ||||| ||||| ||||||| Sbjct 7453 GGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACA 7394 Query 40158 TGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 | | ||| || | | | ||||| ||||| || ||| |||| | |||||| Sbjct 7393 TTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATT 7342 >seq67281 Length=7088 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 7043 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 6984 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||||||||| ||| |||||||| | ||||| || || || |||| Sbjct 6983 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 6924 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || || ||||| || ||| ||| | |||||| || | || |||||||| Sbjct 6923 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 6864 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||| |||||| ||||| | |||||| |||||| Sbjct 6863 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 6822 >seq50219 Length=1725 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 1203 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 1262 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||||||||| ||| |||||||| | ||||| || || || |||| Sbjct 1263 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 1322 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || || ||||| || ||| ||| | |||||| || | || |||||||| Sbjct 1323 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 1382 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||| |||||| ||||| | |||||| |||||| Sbjct 1383 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1424 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 69492 TTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 ||| |||||||| || || || | || ||||| || ||||| |||| ||| |||||| Sbjct 696 TTTCTCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGG 755 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 | ||||||||||||| | || ||||| ||| | ||| ||| | | |||||| || Sbjct 756 AGATTCATTTGGACAAAACATAGACCATTGCCCATTAGCCTCAACCCTCTGCATAAAGAG 815 Query 69612 ATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 ||| || | ||| ||||| ||| ||||||| Sbjct 816 ATCAGGCACCCATAGAGCATAAAAAAGATCTC 847 >seq42762 Length=1633 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 1111 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 1170 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||||||||| ||| |||||||| | ||||| || || || |||| Sbjct 1171 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 1230 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || || ||||| || ||| ||| | |||||| || | || |||||||| Sbjct 1231 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 1290 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||| |||||| ||||| | |||||| |||||| Sbjct 1291 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1332 Score = 107 bits (118), Expect = 3e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 69492 TTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 ||| |||||||| || || || | || ||||| || ||||| |||| ||| |||||| Sbjct 608 TTTCTCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGG 667 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 | ||||||||||||| | || ||||| ||||||| |||||| | | |||||| || Sbjct 668 AGATTCATTTGGACAAAACATAGACCATTGCTCATCATTCTTAACCCTCTGCATAAAGAG 727 Query 69612 ATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 ||| || | ||||||||| ||| ||||||| Sbjct 728 ATCAGGCACCCAAAGAGCATAAAAAAGATCTC 759 >seq40763 Length=101153 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 101108 CCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCCA 101049 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||||||||| ||| |||||||| | ||||| || || || |||| Sbjct 101048 TTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGAT 100989 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || || ||||| || ||| ||| | |||||| || | || |||||||| Sbjct 100988 ACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATATT 100929 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||| |||||| ||||| | |||||| |||||| Sbjct 100928 CCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 100887 >seq73464 Length=101316 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 69793 AGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCG 69852 |||||||||| ||| ||||| ||| | ||||||||||| ||| |||||||| | || Sbjct 33715 AGCATCGGAACAATGCCATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCA 33656 Query 69853 CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGT 69912 || || || || ||||| || || ||||| || | ||| ||| | |||||| Sbjct 33655 CGGATGTTTTGAACAGATACGCCAATCCCTCCAGCTAATTTGCTGATAACAGCACATTCC 33596 Query 69913 TTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || | | |||||||| ||||| |||| |||||| | ||| | |||||| |||||| Sbjct 33595 TTAAGGTTATCATATATTCCCTCAATGCGGTCATCTTTAATGCACACAAGAAAGCAGCTA 33536 Query 69973 GACATTTG 69980 ||| || Sbjct 33535 CTCATCTG 33528 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 69492 TTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 ||| |||||||| || || || | || ||||| || ||||| |||| ||| |||||| Sbjct 34261 TTTCTCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGG 34202 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 | ||||||||||||| | || || || | ||| || ||| | | |||||| || Sbjct 34201 AGATTCATTTGGACAAAACATAGATCATTGTCCTTCACTCTCAACCCTCTGCATAAAGAG 34142 Query 69612 ATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 ||| || | ||||||||| ||| ||||||| | | || |||||| Sbjct 34141 ATCAGGCACCCAAAGAGCATAAAAAAGATCTCGAGCCCGATGTTCTTC 34094 >seq73106 Length=73662 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68737 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATT 68796 ||||| ||| ||||||||||| ||||||||| || | | |||||||| || |||||| Sbjct 73434 ACTCTGCGACTGTAAATATTAGCGGTATATGGCTCAAAGCACTCATTATTGCCAAGAATT 73493 Query 68797 TGAGCAGTTGATGCAGTTGGCATAGGTGC 68825 ||| ||| || ||||||||||| ||||| Sbjct 73494 TGACTAGTCGAAGCAGTTGGCATTGGTGC 73522 >seq55707 Length=875 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 68737 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATT 68796 ||||| ||| ||||||||||| ||||||||| || | | |||||||| || |||||| Sbjct 367 ACTCTGCGACTGTAAATATTAGCGGTATATGGCTCAAAGCACTCATTATTGCCAAGAATT 426 Query 68797 TGAGCAGTTGATGCAGTTGGCATAGGTGC 68825 ||| ||| || ||||||||||| ||||| Sbjct 427 TGACTAGTCGAAGCAGTTGGCATTGGTGC 455 >seq55706 Length=1882 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 68737 ACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATT 68796 ||||| ||| ||||||||||| ||||||||| || | | |||||||| || |||||| Sbjct 229 ACTCTGCGACTGTAAATATTAGCGGTATATGGCTCAAAGCACTCATTATTGCCAAGAATT 170 Query 68797 TGAGCAGTTGATGCAGTTGGCATAGGTGC 68825 ||| ||| || ||||||||||| ||||| Sbjct 169 TGACTAGTCGAAGCAGTTGGCATTGGTGC 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686227884479280