Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq39070 188 6e-43 seq35021 150 1e-31 >seq39070 Length=11651 Score = 188 bits (208), Expect = 6e-43 Identities = 388/577 (67%), Gaps = 0/577 (0%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | | || ||| |||||||||| || || |||| || || | Sbjct 7361 TGTTCCCAATTCAATACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAGGCCTCTTTCT 7420 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 ||||||| || ||||| ||| | || | ||| | || ||| || ||| || Sbjct 7421 GGACAGCCGAGGAAGTCGATCTCTCTCAGGACCTCCGCCAATGGGAAGCCCTAACTCCCG 7480 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || || || || || ||| | || |||||||| || || || || || Sbjct 7481 ACGAGCGTCACTTCATCACTCACGTTCTCGCCTTTTTTGCCGCTTCTGATGGTATTGTTT 7540 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 || ||| | | | || || | ||||||||||| | |||| || || |||| Sbjct 7541 TGGAGAATCTTGCCGGCCGATTCATGAAAGAAGTTCAAATTTCAGAGGCCCGTGCCTTTT 7600 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | || ||||||||||| || || |||||||| || || ||||| ||||| || | || Sbjct 7601 ACGGCTTTCAAATTGCTATCGAGAATATTCACTCCGAGATGTATAGTCTATTGCTCGAGT 7660 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTG 44066 | ||||| || ||| ||||||||||| | | ||| |||||| || || | ||| Sbjct 7661 CCTACATAAAGGATTCAGACGAGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCCTT 7720 Query 44067 CGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAG 44126 || || | || || | ||||| ||| ||||| || || || |||| | Sbjct 7721 GTGTTGAAAAGAAGGCCAATTGGGCACTTCGTTGGATCGATGGCTCGGAATCCTTTGCTG 7780 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186 | || | ||||| ||||| ||| || || || || || || || ||| || | Sbjct 7781 AGCGTGTCGTCGCCTTTGCTTGTGTTGAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGA 7840 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 |||||||| |||||||||| || | ||||| || || || || || || |||||||| Sbjct 7841 TATTTTGGCTAAAGAAACGGGGGCTTATGCCCGGATTAACCTTCTCGAACGAGTTAATTT 7900 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||||||| | ||||| || ||||| ||||| Sbjct 7901 CTCGAGATGAAGGCCTCCATTGTGACTTTGCCTGCTT 7937 >seq35021 Length=73443 Score = 150 bits (166), Expect = 1e-31 Identities = 386/580 (67%), Gaps = 6/580 (1%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | | || ||| | |||||||| || ||| |||| || || | Sbjct 66624 TGTTCCCAATTCAATACCCTCAGATTTGGGAGATGTACAAGAAGGCAGAGGCTTCCTTCT 66565 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 |||| || || || || ||| | || | ||| | || ||| || | | || Sbjct 66564 GGACCGCCGAGGAGGTCGATCTATCTCAGGACCTCCGTCAATGGGAAGCCCTCACTCCCG 66505 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | || || || || || ||| | || || || || || || || || || Sbjct 66504 ACGAGCGTCACTTCATCACTCACGTTCTCGCCTTCTTCGCCGCTTCTGATGGCATTGTTT 66445 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTT 43945 || ||| | | |||| || | |||||||||| ||| || ||||| || ||| Sbjct 66444 TGGAGAATCTCGCCGGTCGATTCATGAAAGAAGTTCAGATTTCC-GAAGCCCGTGCCTTT 66386 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || ||||| ||||| || |||||||| || || ||||| ||||| || | || Sbjct 66385 TACGGTTTCCAAATCGCCATCGAGAATATTCACTCCGAGATGTATAGTCTCTTGCTCGAG 66326 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 | ||||| || || | |||||| | || | ||| || || |||||| | ||| Sbjct 66325 TCTTACATAAAGGACTCCAATGAGAAGAACAGACTCTTTCGCGCAATCGAAACAATTCCT 66266 Query 44066 -GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 ||| | ||| | || || | ||||| ||| ||||| | || || |||| Sbjct 66265 TGCGTTGAAA-AGAAGGCCAAATGGGCACTTCGTTGGATCGACGGCTCGGAATCCTTTGC 66207 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGG 44183 ||||| | ||||| || || ||| ||||| || || || || || | |||||| Sbjct 66206 CGAACGTATAGTCGCCTTCGCTTGTGTCGAAGGAATATTTTTCTCGGGGAGTTTTTGCG- 66148 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | |||||||||||||||||||| || | ||||| || | || || || || ||||||| Sbjct 66147 CGATATTTTGGTTAAAGAAACGTGGCCTTATGCCCGGACTAACCTTCTCGAACGAGTTAA 66088 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 | || || ||||| | || |||||||| |||||||| Sbjct 66087 TCTCCCGAGACGAAGGTCTCCACTGCGATTTCGCTTGCTT 66048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397071861508510