Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 188 6e-43
seq35021 150 1e-31
>seq39070
Length=11651
Score = 188 bits (208), Expect = 6e-43
Identities = 388/577 (67%), Gaps = 0/577 (0%)
Strand=Plus/Plus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| ||||||||||| | | | || ||| |||||||||| || || |||| || || |
Sbjct 7361 TGTTCCCAATTCAATACCCTCAGATTTGGGAAATGTACAAGAAGGCCGAGGCCTCTTTCT 7420
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826
||||||| || ||||| ||| | || | ||| | || ||| || ||| ||
Sbjct 7421 GGACAGCCGAGGAAGTCGATCTCTCTCAGGACCTCCGCCAATGGGAAGCCCTAACTCCCG 7480
Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886
| || || || || || ||| | || |||||||| || || || || ||
Sbjct 7481 ACGAGCGTCACTTCATCACTCACGTTCTCGCCTTTTTTGCCGCTTCTGATGGTATTGTTT 7540
Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946
|| ||| | | | || || | ||||||||||| | |||| || || ||||
Sbjct 7541 TGGAGAATCTTGCCGGCCGATTCATGAAAGAAGTTCAAATTTCAGAGGCCCGTGCCTTTT 7600
Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006
| || ||||||||||| || || |||||||| || || ||||| ||||| || | ||
Sbjct 7601 ACGGCTTTCAAATTGCTATCGAGAATATTCACTCCGAGATGTATAGTCTATTGCTCGAGT 7660
Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTG 44066
| ||||| || ||| ||||||||||| | | ||| |||||| || || | |||
Sbjct 7661 CCTACATAAAGGATTCAGACGAGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCCTT 7720
Query 44067 CGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAG 44126
|| || | || || | ||||| ||| ||||| || || || |||| |
Sbjct 7721 GTGTTGAAAAGAAGGCCAATTGGGCACTTCGTTGGATCGATGGCTCGGAATCCTTTGCTG 7780
Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186
| || | ||||| ||||| ||| || || || || || || || ||| || |
Sbjct 7781 AGCGTGTCGTCGCCTTTGCTTGTGTTGAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGA 7840
Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246
|||||||| |||||||||| || | ||||| || || || || || || ||||||||
Sbjct 7841 TATTTTGGCTAAAGAAACGGGGGCTTATGCCCGGATTAACCTTCTCGAACGAGTTAATTT 7900
Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
||| ||||||||| | ||||| || ||||| |||||
Sbjct 7901 CTCGAGATGAAGGCCTCCATTGTGACTTTGCCTGCTT 7937
>seq35021
Length=73443
Score = 150 bits (166), Expect = 1e-31
Identities = 386/580 (67%), Gaps = 6/580 (1%)
Strand=Plus/Minus
Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766
|||| ||||||||||| | | | || ||| | |||||||| || ||| |||| || || |
Sbjct 66624 TGTTCCCAATTCAATACCCTCAGATTTGGGAGATGTACAAGAAGGCAGAGGCTTCCTTCT 66565
Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826
|||| || || || || ||| | || | ||| | || ||| || | | ||
Sbjct 66564 GGACCGCCGAGGAGGTCGATCTATCTCAGGACCTCCGTCAATGGGAAGCCCTCACTCCCG 66505
Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886
| || || || || || ||| | || || || || || || || || ||
Sbjct 66504 ACGAGCGTCACTTCATCACTCACGTTCTCGCCTTCTTCGCCGCTTCTGATGGCATTGTTT 66445
Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTT 43945
|| ||| | | |||| || | |||||||||| ||| || ||||| || |||
Sbjct 66444 TGGAGAATCTCGCCGGTCGATTCATGAAAGAAGTTCAGATTTCC-GAAGCCCGTGCCTTT 66386
Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005
|| || || ||||| ||||| || |||||||| || || ||||| ||||| || | ||
Sbjct 66385 TACGGTTTCCAAATCGCCATCGAGAATATTCACTCCGAGATGTATAGTCTCTTGCTCGAG 66326
Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065
| ||||| || || | |||||| | || | ||| || || |||||| | |||
Sbjct 66325 TCTTACATAAAGGACTCCAATGAGAAGAACAGACTCTTTCGCGCAATCGAAACAATTCCT 66266
Query 44066 -GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124
||| | ||| | || || | ||||| ||| ||||| | || || ||||
Sbjct 66265 TGCGTTGAAA-AGAAGGCCAAATGGGCACTTCGTTGGATCGACGGCTCGGAATCCTTTGC 66207
Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGG 44183
||||| | ||||| || || ||| ||||| || || || || || | ||||||
Sbjct 66206 CGAACGTATAGTCGCCTTCGCTTGTGTCGAAGGAATATTTTTCTCGGGGAGTTTTTGCG- 66148
Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243
| |||||||||||||||||||| || | ||||| || | || || || || |||||||
Sbjct 66147 CGATATTTTGGTTAAAGAAACGTGGCCTTATGCCCGGACTAACCTTCTCGAACGAGTTAA 66088
Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
| || || ||||| | || |||||||| ||||||||
Sbjct 66087 TCTCCCGAGACGAAGGTCTCCACTGCGATTTCGCTTGCTT 66048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397071861508510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |