Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq65811 100 2e-16 seq72241 98.7 8e-16 seq42370 96.9 3e-15 seq53817 93.3 4e-14 seq73807 84.2 2e-11 >seq65811 Length=66007 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| |||||||| || | |||| ||||||| Sbjct 54799 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCGTCTTCA 54858 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || ||||| | || | | ||| || || || || | |||||| || || Sbjct 54859 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCTTGA 54918 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||||| | | || | ||||| | | ||||| || || || || | ||| Sbjct 54919 ATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTTTTT 54978 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || ||||| || ||||||||||||||| || Sbjct 54979 CCGGTGAGAGTCTTGACAAAGATTTGCATACCT 55011 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || || |||||||||||||||||| | Sbjct 55009 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCC 55068 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| |||| |||||||| ||||||||| | || | | || || || || || Sbjct 55069 AAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 55128 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || || || || | | | || | ||||| | | |||||| Sbjct 55129 ATGCCTTCCTTGTCTTGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACT 55188 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | || || |||| || || ||||||||||||||| || Sbjct 55189 TCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCATACCT 55239 >seq72241 Length=55963 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || ||| || | ||||| || || || || ||||||||||| || Sbjct 40176 CCCCCTCGAAGCCTCAAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCA 40235 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||||| ||||| || |||||| |||| || ||||| ||||| || || Sbjct 40236 AGGGTTCTACCGTCTTCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGA 40295 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||| || | | | || | ||| || | ||| || Sbjct 40296 ATTCCTTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACC 40355 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | |||||| || |||||||| ||||| |||||||| Sbjct 40356 TCAAGAGTGATGGTTTTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || ||| || | ||| | ||||| || ||||| |||||||| ||| Sbjct 40404 CCCCCACGGAGCCTCAAGACGAGATGAAGAGTAGATTCCTTTTGGATATTGTAATCGGCG 40463 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | |||| || | ||| || |||||| | || || | ||| |||||||| || Sbjct 40464 AGAGTCCTGCCGTCCTCCAACTGCTTCCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGA 40523 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| || | | | || | || || | |||||| Sbjct 40524 ATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTGTCAATTGTATCGGAACTCTCAACT 40583 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||||| ||||||||||| ||||| || |||||| Sbjct 40584 TCAAGAGTAATCGTCTTGCCGGTCAGAGTTTTAACAAATATCTGCATA 40631 >seq42370 Length=41228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||| || || | || | || |||||||| || || Sbjct 10858 GTGGATTCCTTCTGAATATTGTAATCAGCCAAAGTACGTCCATCCTCGAGCTGCTTCCCA 10799 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| |||||||| || | ||||| ||||| ||||||| ||| Sbjct 10798 GCGAAGATGAGCCTCTGCTGATCCGGGGGAATCCCCTCCTTATCCTGGATCTTGGCCTTC 10739 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| || |||| | ||||| || ||||| |||| ||| || |||| || Sbjct 10738 ACATTATCTATGGTATCTGAGCTCTCAACCTCCAGAGTAATAGTTTTCCCTGTCAATGTC 10679 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| || |||||| Sbjct 10678 TTGACAAATATCTGCATA 10661 >seq53817 Length=15024 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| ||| ||| || ||||||||||||| ||||| Sbjct 3660 GTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTTCTGC-CGTCTTCGAGCTGCTTACC 3718 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || || ||| || Sbjct 3719 GGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATTTTGGCCTT 3778 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | || || | || ||| || || || || || | || ||||| || || Sbjct 3779 GACATTGTCAATGGTATCCGAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGT 3838 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 3839 TTTCACGAAGATCTGCAT 3856 >seq73807 Length=69832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| ||||| |||||||| | || || || ||||| || || || || Sbjct 38926 TGCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAG 38985 Query 27079 TCATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || || | | | || || |||||||||||||| | || |||||||| || || || Sbjct 38986 -CAAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGG 39044 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || ||||| || ||||| || | | | || | || || | | ||| Sbjct 39045 GGAATGCCTTCTTTGTCTTGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCT 39104 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || | | || || || ||||| || |||||||| ||||| Sbjct 39105 ACTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | ||||| || | || | || || || ||||||||||||||||| Sbjct 39382 TGCCACCACGGAGTCGCAAAACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCTG 39441 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | || || |||||||| || || |||| | ||| || ||||| || | Sbjct 39442 CAAGGGTACGGCCATCCTCAAGCTGTTTCCCAGCAAAAATCAAACGTTGCTGATCAGGGG 39501 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || || ||| ||| | | || | ||||||| | ||| | Sbjct 39502 GAATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCGA 39561 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | || || ||||| || || || ||||||||||| Sbjct 39562 CTTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACGAAGATTTGCAT 39610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424523703823824