Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq36876 109 7e-19 seq25908 96.9 4e-15 seq74098 82.4 1e-10 seq72016 82.4 1e-10 >seq36876 Length=11444 Score = 109 bits (120), Expect = 7e-19 Identities = 228/336 (68%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || || ||||| || | ||| ||||| | ||||| Sbjct 9918 TCAAGAATATCTGCACGATTGGTTGCTGCAATTACAATAATACCAGTGTTTCCTTCAAAC 9977 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || || | |||||||| || ||||||||| || | Sbjct 9978 CCATCCATTTCTGTCAGGAGCTGGTTGAGAGTTTGTTCCCTTTCATCATTTCCTCC---A 10034 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| |||| | | ||| | || || |||||||| ||||||| || ||||| || Sbjct 10035 CCAATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACAAATACAATGCAG 10094 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || ||| | | || ||||| || || | ||||| ||||||||| Sbjct 10095 GGAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGGACACGAGAAGCACCAACACCAACA 10154 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGC 11778 |||||||| ||||| | | |||| | || || || || || || |||||| || Sbjct 10155 AACATCTCAACAAATTCAGAACCAGA-AATTGAGAAAAAAGGAACCCCTGCTTCACCAGC 10213 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || | |||||||| |||||||| Sbjct 10214 AATTGCCTTAGCCAGCAATGTCTTTCCTGTACCTGG 10249 >seq25908 Length=45223 Score = 96.9 bits (106), Expect = 4e-15 Identities = 214/320 (67%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 ||||||||||| || || | | |||||||| ||||||||||||||||| ||| | Sbjct 41206 AAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCC---- 41261 Query 11600 ATACCACC-AGCACTG-----CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||| || ||| ||| | ||| | || || ||||||||||||||||| || ||| Sbjct 41262 --ACCTCCAAGCCCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACA 41319 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || || || || | || | ||||| | ||| | || || || |||||| Sbjct 41320 ATGCAAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACA 41379 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 |||||||||| ||| ||||| | || || | || | |||||| || | ||| Sbjct 41380 CCAACAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCTCA 41439 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || || | |||| || | |||||||| || ||||| || || | ||||| | Sbjct 41440 CCAGCAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGGTGGTCCGACCAGAAGACAG 41499 Query 11834 CCTCGGGGGATCTTGGCACC 11853 ||| || ||||| ||||| Sbjct 41500 CCTTTTGGAATCTTTGCACC 41519 >seq74098 Length=90568 Score = 82.4 bits (90), Expect = 1e-10 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG- 11598 || |||||||| || || || | || |||| |||||| ||||| ||||||||| || Sbjct 3545 AAACCATCCATTTCTGTCAGAAGCTGGTTAAGTGTTTGCTCTCTTTCATCATTTCCTCCA 3486 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | || ||||| || | ||| | || || |||||||||||||| || ||||| | ||| Sbjct 3485 CCTAT-ACCAGTACCTCTCTGCCTCCCAACTGCATCAATCTCATCGATAAAGACTAAACA 3427 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| |||||| || | | || | ||| | || ||| || || || ||||| Sbjct 3426 TGGCGAATTTTCTTTAGCCTTGTTGAACAAATCTCTTACTCTTGACGCCCCAACTCCAAC 3367 Query 11719 AAACATCTC 11727 |||||||| Sbjct 3366 GAACATCTC 3358 >seq72016 Length=67185 Score = 82.4 bits (90), Expect = 1e-10 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||||||||||||||||| || ||||| ||||||||||| ||| |||||||| | || Sbjct 54774 GTGGAGACCCTCATCTCTCGATATAAGCTCATTTGAGAATGTTAGGCCTGGCATCAATCC 54715 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAA 122759 || |||||| | |||| | ||||| || || Sbjct 54714 CCTCTTCTTAAGCCAAAATATAGCACAAAA 54685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627409447579200