Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 105 8e-18
seq25908 86.0 8e-12
>seq39070
Length=11651
Score = 105 bits (116), Expect = 8e-18
Identities = 371/570 (65%), Gaps = 21/570 (4%)
Strand=Plus/Minus
Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786
||| || ||||||| |||||| ||||| || |||||||| | ||| || || ||||||
Sbjct 8220 ATATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAACTCCAT 8161
Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|||| || ||||||| | | ||| | ||| | | || | |
Sbjct 8160 CCAATCGAACGGGTTCTGAACATCATACATTTTTCCATATCCCAAAGCTCCCAGCAATCT 8101
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | || | |||||||||| ||| || |||||| || | || |||
Sbjct 8100 GTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCAGTGCACA 8041
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || ||||| | | |||| |||||||||| ||||| || || ||||| |
Sbjct 8040 GGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACGATTCCCCT 7981
Query 129967 AATGGTCTCCGTGC-CAGGTCTATTG--CGCAA-AGTCTTGAAGAGTTCCACGGCAAACT 130022
|| | ||| || ||| | ||| |||| || || | ||||| |||||| |
Sbjct 7980 GATTCTTTCCTCGCTCAGCT---TTGACCGCAGCAGACT-GTAGAGTAAGCAGGCAAAGT 7925
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||||| || || || || || || | || ||||||||| | || ||||| |
Sbjct 7924 CACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGGCATAA 7865
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
| ||||| ||||| | ||| || ||||||||||| || ||||| || || ||||| |
Sbjct 7864 GCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATTCCCTCAA 7805
Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA--GCGGGACTTTGTATCAAACCACTT 130200
|||| || || || | || ||||||||||||||| || | | | | ||| ||| |
Sbjct 7804 CACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCG-ATCCAACGA--- 7749
Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG--- 130257
| ||||| | ||||| || || | ||| || | ||||| ||||| ||||||
Sbjct 7748 -AGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGAGCCT 7690
Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTA 130287
| ||||| ||||| ||| || |||||
Sbjct 7689 ATGCTTCTCGTCTGA---ATCCTTTATGTA 7663
>seq25908
Length=45223
Score = 86.0 bits (94), Expect = 8e-12
Identities = 245/375 (65%), Gaps = 14/375 (4%)
Strand=Plus/Plus
Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212
||||||||||| ||||| || || ||||| || |||||||| | ||||| || || |
Sbjct 41206 AAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCCA--C 41263
Query 14213 ATACCACCC--GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270
| | | || || | | ||| | || || || ||||| ||||| || ||||| || |
Sbjct 41264 CTCCAAGCCCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAATGC 41323
Query 14271 ATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330
| || || | || ||||| | ||| | |||||| || || ||||| |
Sbjct 41324 AAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACACCAA 41383
Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390
|||||| ||| ||||| | | || | |||| | ||| || ||| || ||||| |
Sbjct 41384 CAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCTCACCAG 41443
Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCAC 14450
| | |||| || | ||||||||||| || || ||| || | ||||| ||
Sbjct 41444 CAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGGTGGTCCGACCAGAAGACAGCCTT 41503
Query 14451 GTGGGATCCTGGCACCACTGCCAAAGTAGCGT-----TCAGGTTGTTTAAGGAAGTCCAC 14505
||| ||| | |||| |||||| | || ||||| | ||| | ||| || ||
Sbjct 41504 TTGGAATCTTTGCAC-----CCAAAGCCGTGTATTTATCAGGGTTTTTCAAGAAATCAAC 41558
Query 14506 GATTTCTTCCAATTC 14520
| ||||| ||||||
Sbjct 41559 CACTTCTTGCAATTC 41573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 617822160647120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |