Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq39070 105 8e-18 seq25908 86.0 8e-12 >seq39070 Length=11651 Score = 105 bits (116), Expect = 8e-18 Identities = 371/570 (65%), Gaps = 21/570 (4%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || ||||||| |||||| ||||| || |||||||| | ||| || || |||||| Sbjct 8220 ATATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAACTCCAT 8161 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 |||| || ||||||| | | ||| | ||| | | || | | Sbjct 8160 CCAATCGAACGGGTTCTGAACATCATACATTTTTCCATATCCCAAAGCTCCCAGCAATCT 8101 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | || | |||||||||| ||| || |||||| || | || ||| Sbjct 8100 GTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCAGTGCACA 8041 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || ||||| | | |||| |||||||||| ||||| || || ||||| | Sbjct 8040 GGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACGATTCCCCT 7981 Query 129967 AATGGTCTCCGTGC-CAGGTCTATTG--CGCAA-AGTCTTGAAGAGTTCCACGGCAAACT 130022 || | ||| || ||| | ||| |||| || || | ||||| |||||| | Sbjct 7980 GATTCTTTCCTCGCTCAGCT---TTGACCGCAGCAGACT-GTAGAGTAAGCAGGCAAAGT 7925 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||||| || || || || || || | || ||||||||| | || ||||| | Sbjct 7924 CACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGGCATAA 7865 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | ||||| ||||| | ||| || ||||||||||| || ||||| || || ||||| | Sbjct 7864 GCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATTCCCTCAA 7805 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGA--GCGGGACTTTGTATCAAACCACTT 130200 |||| || || || | || ||||||||||||||| || | | | | ||| ||| | Sbjct 7804 CACAAGCAAAGGCGACGACACGCTCAGCAAAGGATTCCGAGCCATCG-ATCCAACGA--- 7749 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG--- 130257 | ||||| | ||||| || || | ||| || | ||||| ||||| |||||| Sbjct 7748 -AGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGAGCCT 7690 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 | ||||| ||||| ||| || ||||| Sbjct 7689 ATGCTTCTCGTCTGA---ATCCTTTATGTA 7663 >seq25908 Length=45223 Score = 86.0 bits (94), Expect = 8e-12 Identities = 245/375 (65%), Gaps = 14/375 (4%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 ||||||||||| ||||| || || ||||| || |||||||| | ||||| || || | Sbjct 41206 AAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCCA--C 41263 Query 14213 ATACCACCC--GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 | | | || || | | ||| | || || || ||||| ||||| || ||||| || | Sbjct 41264 CTCCAAGCCCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACAATGC 41323 Query 14271 ATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 | || || | || ||||| | ||| | |||||| || || ||||| | Sbjct 41324 AAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCTCACTCTAGAAGCTCCCACACCAA 41383 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| ||| ||||| | | || | |||| | ||| || ||| || ||||| | Sbjct 41384 CAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCTCACCAG 41443 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCAC 14450 | | |||| || | ||||||||||| || || ||| || | ||||| || Sbjct 41444 CAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGGTGGTCCGACCAGAAGACAGCCTT 41503 Query 14451 GTGGGATCCTGGCACCACTGCCAAAGTAGCGT-----TCAGGTTGTTTAAGGAAGTCCAC 14505 ||| ||| | |||| |||||| | || ||||| | ||| | ||| || || Sbjct 41504 TTGGAATCTTTGCAC-----CCAAAGCCGTGTATTTATCAGGGTTTTTCAAGAAATCAAC 41558 Query 14506 GATTTCTTCCAATTC 14520 | ||||| |||||| Sbjct 41559 CACTTCTTGCAATTC 41573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617822160647120