Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq36876 132 6e-26 seq39070 111 2e-19 seq25908 111 2e-19 seq74098 93.3 5e-14 >seq36876 Length=11444 Score = 132 bits (146), Expect = 6e-26 Identities = 238/339 (70%), Gaps = 14/339 (4%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| ||||| | ||||| || || || || |||| |||||| |||||| || ||| Sbjct 9918 TCAAGAATATCTGCACGATTGGTTGCTGCAATTACAATAATACCAGTGTTTCCTT--CAA 9975 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | |||||||| ||||||| || ||||| | ||||||||||| ||||||||| || Sbjct 9976 ACCCATCCATTTCTGTCAGGAGCTGGTTGAGAGTTTGTTCCCTTTCATCATTTCCT---C 10032 Query 9675 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 |||| |||| | | ||| | || || |||||||| ||||||| || || |||| Sbjct 10033 CACCAATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACAAATACAATGC 10092 Query 9732 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 | || ||| | | | | ||| ||| ||||| || ||||| || || |||||| Sbjct 10093 AGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACACGAGAAGCACCAACACCA 10151 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| ||||| | | | ||| |||| || || || || | |||||| Sbjct 10152 ACAAACATCTCAACAAATTCAGAACCAGAA-ATTGAGAAAAAAGGAACCCCTGCTTCACC 10210 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| || || || | ||||| || |||||||| Sbjct 10211 AGCAATTGCCTTAGCCAGCAATGTCTTTCCTGTACCTGG 10249 >seq39070 Length=11651 Score = 111 bits (122), Expect = 2e-19 Identities = 171/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 94706 AGAAGCA---GCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATT 94762 ||||||| ||||||| || || | || |||| ||| || ||||||| || ||| Sbjct 7682 AGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCCTTGTGTTGAAAAGAAGGCCAATT 7741 Query 94763 GGGCTATGAAGTGGTTTGATACAAAG-TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 94821 |||| | | ||| ||| | | ||| |||||||||||||| || |||| ||| Sbjct 7742 GGGCACT----TCGTTGGATCGATGGCTCGGAATCCTTTGCTGAGCGTGTCGTCGCCTTT 7797 Query 94822 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 94881 || ||||||||||| || || ||||| || || || || || | |||||| ||||| Sbjct 7798 GCTTGTGTTGAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAAGAAA 7857 Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 94941 || || || ||||| || | |||||| |||||| | || ||||| || || || ||| Sbjct 7858 CGGGGGCTTATGCCCGGATTAACCTTCTCGAACGAGTTAATTTCTCGAGATGAAGGCCTC 7917 Query 94942 CA 94943 || Sbjct 7918 CA 7919 >seq25908 Length=45223 Score = 111 bits (122), Expect = 2e-19 Identities = 252/376 (67%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || || ||||| || |||||||||||||| | ||||| || | Sbjct 41206 AAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCC---- 41261 Query 9674 ATACCACCA-GCACTGCGT-----TGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||| ||| || |||| ||| |||| || ||||||||||||||||| || || Sbjct 41262 --ACCTCCAAGCCCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACA 41319 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 9785 ||||| || || | ||| ||||| | ||||| ||| || | || |||| Sbjct 41320 ATGCAAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCT--CACTCTAGAAGCTCCCA 41377 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845 |||||||||||| ||| ||||| | || || | |||| | ||| || || || | Sbjct 41378 CACCAACAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCT 41437 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9905 |||| |||| |||| || | ||| ||||| || ||||| || || | || || Sbjct 41438 CACCAGCAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGGTGGTCCGACCAGAAGAC 41497 Query 9906 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965 ||| ||||||||| || || | |||| | ||||| | || | ||||| | Sbjct 41498 AGCCTTTTGGAATCTTTGCACCCAAAGCCGTGTATTTATCAGGGTTTTTCAAGAAATCAA 41557 Query 9966 CAATTTCTTCCAATTC 9981 | | ||||| |||||| Sbjct 41558 CCACTTCTTGCAATTC 41573 >seq74098 Length=90568 Score = 93.3 bits (102), Expect = 5e-14 Identities = 175/251 (70%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613 ||| || |||||| | ||| || || || | ||||| || || |||||| | Sbjct 3603 ATCTAGAATATCAGGTCTATTGGTTGCAGCAAGGACAATAACTCCAGTGTTTCC--AGTG 3546 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 9672 ||||||||||| ||||||| ||| ||||||| ||||| || | ||||||||| || Sbjct 3545 AAACCATCCATTTCTGTCAGAAGCTGGTTAAGTGTTTGCTCTCTTTCATCATTTCCTCCA 3486 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | || ||||| || | ||| | || || |||||||||||||| || ||||| | || Sbjct 3485 CCTA-TACCAGTACCTCTCTGCCTCCCAACTGCATCAATCTCATCGATAAAGACTAAACA 3427 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC--ACACCA 9790 ||| |||||| ||| | || | ||| | | || |||| ||||| || ||| Sbjct 3426 TGGCGAATTTTCTTTAGCCTTGTTGAACAAATCTCTT--ACTCTTGACGCCCCAACTCCA 3369 Query 9791 ACAAACATCTC 9801 || |||||||| Sbjct 3368 ACGAACATCTC 3358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582682628150480