Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq36876 132 6e-26
seq39070 111 2e-19
seq25908 111 2e-19
seq74098 93.3 5e-14
>seq36876
Length=11444
Score = 132 bits (146), Expect = 6e-26
Identities = 238/339 (70%), Gaps = 14/339 (4%)
Strand=Plus/Plus
Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614
||||| ||||| | ||||| || || || || |||| |||||| |||||| || |||
Sbjct 9918 TCAAGAATATCTGCACGATTGGTTGCTGCAATTACAATAATACCAGTGTTTCCTT--CAA 9975
Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674
| |||||||| ||||||| || ||||| | ||||||||||| ||||||||| ||
Sbjct 9976 ACCCATCCATTTCTGTCAGGAGCTGGTTGAGAGTTTGTTCCCTTTCATCATTTCCT---C 10032
Query 9675 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
|||| |||| | | ||| | || || |||||||| ||||||| || || ||||
Sbjct 10033 CACCAATTCCAGTTCCTCTTTGTCTCCCAACAGCATCAATTTCATCAACAAATACAATGC 10092
Query 9732 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790
| || ||| | | | | ||| ||| ||||| || ||||| || || ||||||
Sbjct 10093 AGGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACACGAGAAGCACCAACACCA 10151
Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849
||||||||||| ||||| | | | ||| |||| || || || || | ||||||
Sbjct 10152 ACAAACATCTCAACAAATTCAGAACCAGAA-ATTGAGAAAAAAGGAACCCCTGCTTCACC 10210
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||||| || || || | ||||| || ||||||||
Sbjct 10211 AGCAATTGCCTTAGCCAGCAATGTCTTTCCTGTACCTGG 10249
>seq39070
Length=11651
Score = 111 bits (122), Expect = 2e-19
Identities = 171/242 (71%), Gaps = 8/242 (3%)
Strand=Plus/Plus
Query 94706 AGAAGCA---GCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATT 94762
||||||| ||||||| || || | || |||| ||| || ||||||| || |||
Sbjct 7682 AGAAGCATAGGCTCTTTCGTGCGATTGAGACCATTCCTTGTGTTGAAAAGAAGGCCAATT 7741
Query 94763 GGGCTATGAAGTGGTTTGATACAAAG-TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTT 94821
|||| | | ||| ||| | | ||| |||||||||||||| || |||| |||
Sbjct 7742 GGGCACT----TCGTTGGATCGATGGCTCGGAATCCTTTGCTGAGCGTGTCGTCGCCTTT 7797
Query 94822 GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAG 94881
|| ||||||||||| || || ||||| || || || || || | |||||| |||||
Sbjct 7798 GCTTGTGTTGAGGGAATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAAGAAA 7857
Query 94882 CGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTC 94941
|| || || ||||| || | |||||| |||||| | || ||||| || || || |||
Sbjct 7858 CGGGGGCTTATGCCCGGATTAACCTTCTCGAACGAGTTAATTTCTCGAGATGAAGGCCTC 7917
Query 94942 CA 94943
||
Sbjct 7918 CA 7919
>seq25908
Length=45223
Score = 111 bits (122), Expect = 2e-19
Identities = 252/376 (67%), Gaps = 16/376 (4%)
Strand=Plus/Plus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|| |||||||| || || ||||| || |||||||||||||| | ||||| || |
Sbjct 41206 AAGCCATCCATTTCAGTTAAAAGCTGATTAATAGTTTGTTCTCTCTCATCGTTTCC---- 41261
Query 9674 ATACCACCA-GCACTGCGT-----TGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727
||| ||| || |||| ||| |||| || ||||||||||||||||| || ||
Sbjct 41262 --ACCTCCAAGCCCTGCTCCTCTCTGCCTTCCAACTGCATCAATCTCATCAATAAAAACA 41319
Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCA 9785
||||| || || | ||| ||||| | ||||| ||| || | || ||||
Sbjct 41320 ATGCAAGGAGCCTTGGCCTTAGCCTTCTCAAACAAATCCCT--CACTCTAGAAGCTCCCA 41377
Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845
|||||||||||| ||| ||||| | || || | |||| | ||| || || || |
Sbjct 41378 CACCAACAAACAACTCAACAAACTCTGAAGCTGCACATGAAAAGAATGGCACGCCAGCCT 41437
Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 9905
|||| |||| |||| || | ||| ||||| || ||||| || || | || ||
Sbjct 41438 CACCAGCAACTGCTCTAGCTAAAAGGGTCTTCCCTGTACCAGGTGGTCCGACCAGAAGAC 41497
Query 9906 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 9965
||| ||||||||| || || | |||| | ||||| | || | ||||| |
Sbjct 41498 AGCCTTTTGGAATCTTTGCACCCAAAGCCGTGTATTTATCAGGGTTTTTCAAGAAATCAA 41557
Query 9966 CAATTTCTTCCAATTC 9981
| | ||||| ||||||
Sbjct 41558 CCACTTCTTGCAATTC 41573
>seq74098
Length=90568
Score = 93.3 bits (102), Expect = 5e-14
Identities = 175/251 (70%), Gaps = 10/251 (4%)
Strand=Plus/Minus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613
||| || |||||| | ||| || || || | ||||| || || |||||| |
Sbjct 3603 ATCTAGAATATCAGGTCTATTGGTTGCAGCAAGGACAATAACTCCAGTGTTTCC--AGTG 3546
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT-GG 9672
||||||||||| ||||||| ||| ||||||| ||||| || | ||||||||| ||
Sbjct 3545 AAACCATCCATTTCTGTCAGAAGCTGGTTAAGTGTTTGCTCTCTTTCATCATTTCCTCCA 3486
Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732
| || ||||| || | ||| | || || |||||||||||||| || ||||| | ||
Sbjct 3485 CCTA-TACCAGTACCTCTCTGCCTCCCAACTGCATCAATCTCATCGATAAAGACTAAACA 3427
Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC--ACACCA 9790
||| |||||| ||| | || | ||| | | || |||| ||||| || |||
Sbjct 3426 TGGCGAATTTTCTTTAGCCTTGTTGAACAAATCTCTT--ACTCTTGACGCCCCAACTCCA 3369
Query 9791 ACAAACATCTC 9801
|| ||||||||
Sbjct 3368 ACGAACATCTC 3358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582682628150480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |