Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq61065 84.2 1e-11 >seq61065 Length=19622 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/200 (72%), Gaps = 12/200 (6%) Strand=Plus/Minus Query 65090 GTTCCAAACTGACCATTTGGCATTAATAA-ATTAATATTGTTTGAACCAATAAAATTCTG 65148 || |||||||||||| |||| | || || ||| |||||||| || | ||||| ||| Sbjct 5941 GTACCAAACTGACCA-TTGGGTTGAAGAAGATTGATATTGTTACTGCCCACAAAATCCTG 5883 Query 65149 AGCCATTCCGATAATTG--CT-GCATTTAAACTCGCTTCACCGTGATGATATCCTGAATG 65205 |||||| ||||| |||| || ||| | |||| |||||| ||||| || | || || Sbjct 5882 AGCCATACCGATTATTGTACTGGCA---AGACTCTGTTCACCATGATGGTAAGCAGAGTG 5826 Query 65206 TTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAA--TTCTTTTTA 65263 || |||||||| ||| || ||||| || ||| |||| ||| ||| |||| || | Sbjct 5825 CTCTGAGACATAACCAGAGAACTGAGCTACCTTTGCTTCC-TTGACAAAGTTTCTCTTGA 5767 Query 65264 AA-TGCAGAATACAATATTT 65282 || ||||| | ||| ||| Sbjct 5766 AAGAACAGAAAAGAATCTTT 5747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235452216900300