Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq35021 127 2e-24 >seq35021 Length=73443 Score = 127 bits (140), Expect = 2e-24 Identities = 354/532 (67%), Gaps = 12/532 (2%) Strand=Plus/Minus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| ||||| || | ||| |||||| ||| ||||||| | || || | |||| Sbjct 66591 TGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGTCGATCTATCTCAGGACC 66532 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | ||||| |||| | |||||||| || ||||||| || || |||| Sbjct 66531 TCCGTCAATGGGAAGCCCTCACTCCCGACGAGCGTCACTTCATCACTCACGTTCTCGCCT 66472 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTC--CAAGGA 59770 ||||||| || |||||| ||||| |||| ||| | | | | | ||| || || Sbjct 66471 TCTTCGCCGCTTCTGATGGCATTGTTTTGGAGAATCTCGCC--GGTCGATTCATGAAAGA 66414 Query 59771 TGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAACGAGTCTATC 59828 || |||||| |||| ||||| | || |||| || || | ||| || |||| ||| Sbjct 66413 AGTTCAGATTTCCGAAGCCCGTGCCTTTTACG-GTTTCCAAATCG-CCATCGAGAATATT 66356 Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCT 59888 |||||||||| ||| ||| || |||| | | ||||| | | |||||| Sbjct 66355 CACTCCGAGATGTATAGTCTCTTGCTCGAGTCTTACATAAAGGACTCCAATGAGAAGAAC 66296 Query 59889 GGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || || || || || || || | || || ||| || | || || ||||||| | Sbjct 66295 AGACTCTTTCGCGCAATCGAAACAATTCCTTGC-GTTGAAAAGAAGGCCAAATGGGCACT 66237 Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 | ||||| || || | | ||| ||||| ||||| | | || || || || || | Sbjct 66236 TCGTTGGATCGACGGCTCG-GAATCCTTTGCCGAACGTATAGTCGCCTTCGCTTGTGTCG 66178 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 ||||||| || ||||| || || || || || || ||| | || || |||||||| | Sbjct 66177 AAGGAATATTTTTCTCGGGGAGTTTTTGCGCGATATTTTGGTTAAAGAAACGTGGCCTTA 66118 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||| || || | ||||| |||||| | || ||||| ||||| || ||||| Sbjct 66117 TGCCCGGACTAACCTTCTCGAACGAGTTAATCTCCCGAGACGAAGGTCTCCA 66066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547981061078880