Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq35021 127 2e-24
>seq35021
Length=73443
Score = 127 bits (140), Expect = 2e-24
Identities = 354/532 (67%), Gaps = 12/532 (2%)
Strand=Plus/Minus
Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652
|||| ||||| || | ||| |||||| ||| ||||||| | || || | ||||
Sbjct 66591 TGTACAAGAAGGCAGAGGCTTCCTTCTGGACCGCCGAGGAGGTCGATCTATCTCAGGACC 66532
Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712
| | ||||| |||| | |||||||| || ||||||| || || ||||
Sbjct 66531 TCCGTCAATGGGAAGCCCTCACTCCCGACGAGCGTCACTTCATCACTCACGTTCTCGCCT 66472
Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTC--CAAGGA 59770
||||||| || |||||| ||||| |||| ||| | | | | | ||| || ||
Sbjct 66471 TCTTCGCCGCTTCTGATGGCATTGTTTTGGAGAATCTCGCC--GGTCGATTCATGAAAGA 66414
Query 59771 TGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATC--AGTCGTTCAACGAGTCTATC 59828
|| |||||| |||| ||||| | || |||| || || | ||| || |||| |||
Sbjct 66413 AGTTCAGATTTCCGAAGCCCGTGCCTTTTACG-GTTTCCAAATCG-CCATCGAGAATATT 66356
Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCT 59888
|||||||||| ||| ||| || |||| | | ||||| | | ||||||
Sbjct 66355 CACTCCGAGATGTATAGTCTCTTGCTCGAGTCTTACATAAAGGACTCCAATGAGAAGAAC 66296
Query 59889 GGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947
| || || || || || || || | || || ||| || | || || ||||||| |
Sbjct 66295 AGACTCTTTCGCGCAATCGAAACAATTCCTTGC-GTTGAAAAGAAGGCCAAATGGGCACT 66237
Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006
| ||||| || || | | ||| ||||| ||||| | | || || || || || |
Sbjct 66236 TCGTTGGATCGACGGCTCG-GAATCCTTTGCCGAACGTATAGTCGCCTTCGCTTGTGTCG 66178
Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066
||||||| || ||||| || || || || || || ||| | || || |||||||| |
Sbjct 66177 AAGGAATATTTTTCTCGGGGAGTTTTTGCGCGATATTTTGGTTAAAGAAACGTGGCCTTA 66118
Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118
|||| || || | ||||| |||||| | || ||||| ||||| || |||||
Sbjct 66117 TGCCCGGACTAACCTTCTCGAACGAGTTAATCTCCCGAGACGAAGGTCTCCA 66066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547981061078880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |