Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq35021 122 1e-22 seq34857 89.7 6e-13 seq53399 84.2 2e-11 >seq35021 Length=73443 Score = 122 bits (134), Expect = 1e-22 Identities = 335/502 (67%), Gaps = 10/502 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 ||||| |||| | || || || ||||| || | || || |||||||| ||||| ||| Sbjct 66072 CCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCGGGCATAAGGCCACGTTTC 66131 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || |||||||| || || || || || ||| || || ||||||||||| || ||| Sbjct 66132 TTTAACCAAAATATCGCGCAAAAACTCCCCGAGAAAAATATTCCTTCGACACAAGCGAAG 66191 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG-GAAGTC-ATCCAAGTCTGAGCCCATTCAG 74946 ||||| | |||| || || | | | || | ||| |||||| | ||||||| | Sbjct 66192 GCGACTATACGTTCGGCAAAGGATTC--CGAGCCGTCGATCCAACGAAGTGCCCATTTGG 66249 Query 74947 CTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 | ||| ||| | ||| ||| | || ||||| || | ||||| || |||||| | | Sbjct 66250 C-CTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAAGAGTCTGTTCTTCTCATTG 66308 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTG 75065 | ||||| | | || | || || ||| |||| || ||||| |||| || Sbjct 66309 GAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTCGGAGTGAATATTCTCGATG 66368 Query 75066 AACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATT 75124 ||| ||| | |||| || | || || || | |||||| || | |||| | ||| Sbjct 66369 -GCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTGAAC-TTCTTTCATGAATC 66426 Query 75125 CA-TGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | ||| |||||||| || ||||| || || |||||||| || || || || Sbjct 66427 GACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAAGAAGGCGAGAACGTGAG 66486 Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAAT 75243 |||| ||||| ||||| ||| |||||| ||||| | |||||| | | || Sbjct 66487 TGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACGGAGGTCCTGAGATAGAT 66546 Query 75244 CAATCTCCTCGACCGTCCAGAA 75265 | | ||||||| | |||||||| Sbjct 66547 CGACCTCCTCGGCGGTCCAGAA 66568 >seq34857 Length=18532 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 80161 TGCTCCCGGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATC 80220 ||||||||| |||| | |||||| |||| || ||| |||||||||||| ||||||||| | Sbjct 712 TGCTCCCGGCGAGGCTCGAACTCGCGACCTTCGGCTCATAAGACCAACGCTCTAACCAAC 771 Query 80221 TGAGTTACGAGAGCCTG 80237 |||| |||| ||||||| Sbjct 772 TGAGCTACGGGAGCCTG 788 >seq53399 Length=29166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 11975 TGCTTTCTTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 11916 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 11915 TGAGCTAAGAAAGCAA 11900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546673558459600