Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq73807 140 2e-28 seq42370 125 4e-24 seq72241 120 2e-22 seq65811 118 7e-22 >seq73807 Length=69832 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | ||||||||||||||| ||||| ||||||||| ||||||||||| | Sbjct 38927 GCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTTGGATGTTATAATCAGC 38986 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 |||||| | | || ||||| ||||||||||||||||| | |||||| ||||| || || Sbjct 38987 AAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGACGCTGCTGGTCAGGGGG 39046 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| || | |||||| || ||| || || ||| || | Sbjct 39047 AATGCCTTCTTTGTCT-TGAATCTTAGCCTTAACGTTATCAATCGTATCAGAGCTTTCTA 39105 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| | || || || || | || || ||||| |||||||| Sbjct 39106 CTTCTAGGGTAACGGTCTTCCCAGTAAGAGTCTTGACAAAGATCTGCAT 39154 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| | ||| || | |||||| ||| ||||||||| ||||||||||||| Sbjct 39839 GCCACCCCGAAGCCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTATAATCTGC 39898 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || |||||||| || ||||| || || | ||| || || || || Sbjct 39899 AAGGGTACGACCATCCTCCAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCAGGGGG 39958 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||||| ||| ||||| ||| || || ||| ||||| ||||| | Sbjct 39959 AATTCCTTCCTTGTCT-TGAATTTTTGCTTTGACATTATCAATAGTGTCAGAACTCTCTA 40017 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||||| || || || || | || || ||||| |||||||| Sbjct 40018 CTTCGAGAGTTATTGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 40066 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| ||||||||| || || || |||| || || || | || ||||||||| Sbjct 39180 TGAAGTGTGGACTCCTTTTGGATATTGTAGTCTGCCAGGGTACGGCCATCCTCAAGTTGT 39239 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || || || || ||||| || || | |||||||||||| ||| ||| Sbjct 39240 TTCCCTGCAAAAATCAAGCGTTGCTGGTCTGGGGGAATTCCCTCCTTGTC-CTGAATTTT 39298 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | ||||||| | |||||||||| ||| || ||||| | ||| || || || || || Sbjct 39299 GGCTTTAACGTTGTCAATTGTGTCTGAGCTTTCAACTTCAAGGGTAATGGTCTTTCCTGT 39358 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || || ||||| ||||||||| Sbjct 39359 CAGAGTCTTGACAAAGATCTGCATG 39383 Score = 114 bits (126), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || ||||| || | || || ||| |||||||||||| || || |||| ||| || || Sbjct 39393 AGTCGCAAAACAAGGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCTGCAAGGGTACGG 39452 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| ||||| || ||||| || ||||| || || || || || | ||||||| Sbjct 39453 CCATCCTCAAGCTGTTTCCCAGCAAAAATCAAACGTTGCTGATCAGGGGGAATTCCCTCC 39512 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| || | |||||||||| ||| || ||||||| ||| Sbjct 39513 TTGTC-CTGAATTTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCGACTTCCAGGGT 39571 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || || || |||||| Sbjct 39572 GATGGTCTTTCCTGTCAGGGTCTTAACGAAGATTTGCATG 39611 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| | ||| || | |||||| ||| ||||||||| ||||| || |||| Sbjct 39611 GCCACCACGAAGTCTCAAGACAAGATGGAGGGTGGACTCCTTTTGTATGTTGTAGTCTGC 39670 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || |||||||| || || || || || | || ||||| || || Sbjct 39671 AAGGGTACGGCCATCCTCCAGTTGTTTCCCTGCGAAAATCAATCTTTGCTGGTCTGGGGG 39730 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | |||||||||| ||| || | Sbjct 39731 AATTCCCTCCTTGTCCTGGAT-TTTGGCTTTGACATTGTCAATTGTGTCTGAGCTTTCAA 39789 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || || || | || || ||||| || |||||| Sbjct 39790 CTTCAAGGGTGATGGTCTTTCCTGTCAGGGTCTTAACAAAGATTTGCATG 39839 >seq42370 Length=41228 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| ||||| ||| || ||| ||||||||||||||||||||| | Sbjct 10660 CCACCTCTCAGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 10601 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | || || |||||||| || || | ||| |||||||| || Sbjct 10600 AGAGTTCTGCCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGA 10541 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || ||| |||| ||||| || |||||| || || || || Sbjct 10540 ATCCCTTCCTTATC-CTGAATCTTTGCCTTAACATTATCAATTGTATCAGAACTTTCAAC 10482 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| || | || || |||||||||||||| Sbjct 10481 CTCAAGAGTAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||||||||| | || ||||| |||| || | |||||| ||||| || Sbjct 9940 TCCTTCTGTATGTTATAATCGGCTAGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAG 9881 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | ||||| || ||||| || | |||||||| ||| |||| || | || || | Sbjct 9880 ATAAGGCGCTGCTGATCCGGAGGGATACCCTCCTTATCTTGGATC-TTAGCCTTGACATT 9822 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || || ||||| || || | ||||| || || || |||| |||||||| Sbjct 9821 ATCAATAGTATCGGAACTCTCAACCTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCAC 9762 Query 34695 AAAAATCTGCAT 34706 || |||||||| Sbjct 9761 GAAGATCTGCAT 9750 >seq72241 Length=55963 Score = 120 bits (132), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||||||||| |||||| || || |||||||| | || ||||| |||| || ||||| Sbjct 40655 ATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCGAGGGTTCGGCCGTCCTCGAGTTG 40714 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| ||||| || |||| ||||| || || || || | ||||||||||||| ||| | Sbjct 40715 TTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGGATTCCCTCCTTGTCT-TGAATCT 40773 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | | || || | ||||| || |||||| || || | ||| || || ||||||| Sbjct 40774 TAGCCTTGACATTGTCGATTGTATCGGAGCTCTCGACCTCAAGGGTAATTGTCTTACCGG 40833 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTT 34709 ||| |||||||| || |||||||| || Sbjct 40834 TTAGGGTTTTCACGAAGATCTGCATCTT 40861 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||||||||||| ||| |||||| ||||||||||||||||||||| | Sbjct 39948 CCACCCCTCAGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCT 40007 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || |||||||| || | | ||||| ||||| || Sbjct 40008 AGAGTACGACCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGG- 40066 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||| ||| ||| |||| || || || || || || || || || Sbjct 40067 AATCCCTTCTTTATCCTGAATCTTTGCCTTGACATTATCGATGGTATCAGAACTTTCAAC 40126 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| || | || || |||||||||||||| Sbjct 40127 CTCAAGAGTAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 >seq65811 Length=66007 Score = 118 bits (130), Expect = 7e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||| ||||| |||||||| || || | | || || Sbjct 54790 AGACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAAGGTGCGG 54849 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||||||||| || || |||||||| || || | ||| ||||| || || | |||||| Sbjct 54850 CCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCCTCC 54909 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | ||| ||| | ||| ||||| |||||| || |||| ||| Sbjct 54910 TTGTCT-TGAATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGT 54968 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| ||||| | || || ||||| || ||||| Sbjct 54969 GATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 Score = 114 bits (126), Expect = 8e-21 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG--AAAGTG-TT 34545 ||||| | || | |||||| || |||||| || || || || || | ||||| || Sbjct 54363 AGACGGAGGACAAGATGGAGTGTTGACTCCTTCTGGATATTGTAGTCAGCCAAAGTCCTT 54422 Query 34546 CGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCC 34605 | | ||||| || || ||||| ||||| || || | ||| ||||| || || | |||| Sbjct 54423 C---CATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCC 54479 Query 34606 TCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCAC 34664 ||||||||| ||| ||||| || || | ||| ||||| ||||||||| |||| Sbjct 54480 TCCTTGTCTTGGAT-TTTTGCCTTCACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAG 54538 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || |||||||| || || |||||||| |||||||| Sbjct 54539 GGTGATAGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 54580 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||| | ||||| ||||| || ||||||||||||||| ||||| | | Sbjct 55237 CCTCCCCTCAAACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCCGCA 55296 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| |||| || || || || |||||||| || | | || ||||| || || Sbjct 55297 AGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATCAGCCTTTGCTGGTCTGGAGGA 55356 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||| || |||| |||| || ||| || || ||||| |||||| || Sbjct 55357 ATTCCCTCCTTATCCTGGATC-TTTGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGAC 55415 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || ||||| | || || || || |||||||| Sbjct 55416 TTCGAGAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 55463 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || ||| ||||||||||| || || || | | || || Sbjct 55018 AGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCCAAGGTGCGG 55077 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || |||||||| || || || | || ||||| || || | || ||| Sbjct 55078 CCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATGCCTTCC 55137 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || ||| | || ||||| |||||| ||||| | || Sbjct 55138 TTGTCT-TGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAACTTCGAGCGT 55196 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || || || ||||| || ||||| Sbjct 55197 GATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314425416005366