Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq72083 221 1e-52
seq65532 199 5e-46
seq56894 187 3e-42
seq73955 161 1e-34
seq69198 161 1e-34
seq66950 145 9e-30
seq26852 129 7e-25
seq67167 107 2e-18
seq57833 95.1 1e-14
seq77419 84.2 3e-11
seq71024 82.4 9e-11
>seq72083
Length=18787
Score = 221 bits (244), Expect = 1e-52
Identities = 269/364 (74%), Gaps = 2/364 (1%)
Strand=Plus/Plus
Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796
|| || || || ||||| ||||| || | ||||||| |||| | ||||| |||||
Sbjct 7344 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCAGTCAAGAGGAAGAA 7403
Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856
|| || || || ||| | || || ||||| ||||| || || ||| |||| |||||| |
Sbjct 7404 ACTTATAATATCGTACCCGCTCATGGTTATTTTGGACGACTGATCGTCCAATATGCTAAT 7463
Query 176857 TTCAATAACTCA-AGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTG 176915
||||| || || | || | |||||| || | || || | || || || | |||||
Sbjct 7464 TTCAAAAATTCCCATTCGT-TACACTTCATCTTAGCTGCTTAGCCTGTAGTAGGTATCTG 7522
Query 176916 GTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 176975
||| ||||| | ||| | |||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 7523 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 7582
Query 176976 GTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGC 177035
||||| | || | ||| || ||| ||| |||| |||||| ||||||||||
Sbjct 7583 ATCTGTAGTTGATAGTCAAGGTTGTGTAATTAATACTTGGGCTGATATCATTAACCGTGC 7642
Query 177036 AAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 177095
||||||||||||||| ||||||| || ||||||||||| || ||||| || ||||| ||
Sbjct 7643 TAACCTTGGTATGGAATTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 7702
Query 177096 TGCT 177099
| ||
Sbjct 7703 TACT 7706
Score = 96.9 bits (106), Expect = 4e-15
Identities = 192/279 (69%), Gaps = 9/279 (3%)
Strand=Plus/Plus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTG-CTGCAGCATGT 176205
||||| |||| ||||||||||| | ||||| || | | || | || | ||| | |
Sbjct 6662 TTTACATTGGATGGTTTGGTGTTTTGATGATCCC--GAC--CTTATTGACCGCAACTTCC 6717
Query 176206 ---TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCA 176262
||||| ||| || ||||| || || || || ||||| || |||||||| | |||
Sbjct 6718 ATATTTATTACTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGTACCC 6777
Query 176263 GTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCA 176322
| || ||||| |||| || |||||||| || || |||| || | || | ||
Sbjct 6778 ATTTCATGATCTTTACTTTACGGAAACAATATTATTTCAGTGCCATTATTCTTACT-TCT 6836
Query 176323 AACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTC 176382
|| || || | ||||| |||||||||||||||| ||| | ||||| |||||| |
Sbjct 6837 GCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGTGGCATCCGTTGATGAATGGTTA 6896
Query 176383 TACAATGGAGGACCATACCAACTCGTTGTATTCCACTTC 176421
|| || || || || || |||| |||| | ||||||
Sbjct 6897 TATAACGGTGGTCCTTATGAACTAATTGTTCTACACTTC 6935
Score = 93.3 bits (102), Expect = 5e-14
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592
|||||| | | || ||||||||||||||| ||| ||||||||||||||||| || ||
Sbjct 7140 GTTTTCTTGATATACCCATTCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 7199
Query 176593 TCAGGTACATTCAACTTTATGTTTGTATT 176621
|| ||||| |||||||| ||| |||||||
Sbjct 7200 TCTGGTACTTTCAACTTCATGATTGTATT 7228
>seq65532
Length=34246
Score = 199 bits (220), Expect = 5e-46
Identities = 224/300 (75%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 176800 TACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 176859
|| || || |||| || || ||||| ||||| | | |||||||| |||||| ||||
Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000
Query 176860 AATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTT 176919
|| || || | | ||||||||||| || || | || || || | |||| |||
Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060
Query 176920 ACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 176979
||||| | ||| | |||| ||||| |||||||| ||||||||||| |||||||| |||
Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120
Query 176980 GTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAAC 177039
|| | || | ||| || ||| ||| |||| |||||| |||||||||| |||
Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180
Query 177040 CTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099
|||||||||||||||||||| || ||||||||||| || ||||| || ||||| ||||||
Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCT 3240
>seq56894
Length=101133
Score = 187 bits (206), Expect = 3e-42
Identities = 251/346 (73%), Gaps = 4/346 (1%)
Strand=Plus/Plus
Query 176473 CTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCA 176532
|| || ||||| |||||||| ||||||||| || || | || | || || | ||
Sbjct 63395 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACCGCT 63454
Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592
||||| | |||| ||| || |||||||| ||| ||||||||||||||||| || ||
Sbjct 63455 ATTTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 63514
Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652
|| ||||| |||||||| ||| |||||||||| || ||||||||||| || |||||| ||
Sbjct 63515 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCA 63574
Query 176653 TTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT-TTCTCAGCAATGCACGG 176711
|| || ||| | || ||||| | | ||| || || | |||| ||| || ||||| ||
Sbjct 63575 TTTCACATGTTAGGCGTAGCTG--GGGTTCGGCGGCT-TCTTATTCAGTGCTATGCATGG 63631
Query 176712 AAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGG 176771
| || |||||| | | || || || || ||||| ||||| || | ||
Sbjct 63632 TTCCTTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 63691
Query 176772 TTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCA 176817
||||| |||||| ||||| ||||| || || || || ||||| |||
Sbjct 63692 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCA 63737
>seq73955
Length=113899
Score = 161 bits (178), Expect = 1e-34
Identities = 189/253 (75%), Gaps = 2/253 (1%)
Strand=Plus/Minus
Query 176823 TTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC-AAGAAGTCTTCACT 176881
||| ||||| || | |||||||| |||||| |||||| || || || || | ||||
Sbjct 50342 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGT-TACACT 50284
Query 176882 TCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAA 176941
||||||| || || | || || || | | |||||| ||||| | ||| | |||| |
Sbjct 50283 TCTTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTA 50224
Query 176942 TGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAG 177001
|||| |||||||| ||||||||||| |||||||| ||||| | || | | | |
Sbjct 50223 TGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTG 50164
Query 177002 TGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACG 177061
| ||| ||| | || |||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 50163 TAATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 50104
Query 177062 AGCGTAATGCTCA 177074
| |||||| ||||
Sbjct 50103 AACGTAATACTCA 50091
>seq69198
Length=26917
Score = 161 bits (178), Expect = 1e-34
Identities = 232/324 (72%), Gaps = 5/324 (2%)
Strand=Plus/Minus
Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592
|||||| | |||| ||| ||||| ||||| ||| ||| ||||||||||||| || ||
Sbjct 7117 GTTTTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATC 7058
Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652
|| ||||| || || || ||| |||||||||| || ||||||||||| || || ||| ||
Sbjct 7057 TCTGGTACTTTTAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACTCA 6998
Query 176653 TTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAG--CAATGCACG 176710
||||| ||| | || ||||| || || || || || ||| || |||| | ||||| |
Sbjct 6997 TTCCA-ATGTTGGGCGTAGCTGGGGTATTCGGCGG--CTCCTTATTCAGTTCTATGCATG 6941
Query 176711 GAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACG 176770
| | || |||||| | | | || || || ||||| ||||| || |
Sbjct 6940 GTTCCTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAA 6881
Query 176771 GTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTG 176830
|||||| ||| || ||||| ||| || || || || || |||||||| ||||| |||
Sbjct 6880 GTTACAGATTTGGTCAAGAGACAGAAACTTATAATATCGTTGCTGCACATGGTTATTTTA 6821
Query 176831 GTCGTCTTATCTTCCAGTATGCTT 176854
| || | |||||||| ||||||
Sbjct 6820 GCCGATTGATCTTCCAACATGCTT 6797
>seq66950
Length=22296
Score = 145 bits (160), Expect = 9e-30
Identities = 181/247 (73%), Gaps = 1/247 (0%)
Strand=Plus/Plus
Query 176735 TTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAG 176794
|||| || || || ||||| ||||| || | ||||||| |||| | ||||| ||||
Sbjct 3493 TTAGGGAAACTACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCAGTCAAGAGGAAG 3552
Query 176795 AGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTT 176854
| || || || || ||||| || || ||||| ||||| || | |||||||| ||||||
Sbjct 3553 AAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 3612
Query 176855 CTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCT 176914
||||||||| || | | ||||||||||| || || | || || || | ||||
Sbjct 3613 GTTTCAATAAATCCCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 3672
Query 176915 GGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACC 176974
|||| ||||| | | | | |||| ||||| |||||||| ||||||||||| ||||||
Sbjct 3673 GGTTCACTGCTTTAGAT-ATAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACA 3731
Query 176975 AGTCTGT 176981
| | |||
Sbjct 3732 AATTTGT 3738
>seq26852
Length=33301
Score = 129 bits (142), Expect = 7e-25
Identities = 243/356 (68%), Gaps = 6/356 (2%)
Strand=Plus/Minus
Query 176230 CCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAAC 176289
|| || || ||||| || |||||| | ||||| | |||||| |||| | ||||||
Sbjct 11368 CCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGGATCTTTACTTCACGGAAAC 11309
Query 176290 AACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCA 176349
|| || || ||||| | | | || | || | || || | | ||||| ||||||
Sbjct 11308 AATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTTGCACTTTTACCCA 11249
Query 176350 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTT 176409
|| | | |||| ||| | |||| |||||| | || ||||| || || || |||| ||
Sbjct 11248 ATTTAGAAAGCGGCATCCATTGATGAATGGTTATATAATGGTGGTCCTTATGAACTAATT 11189
Query 176410 GTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTAC 176469
|| | |||||| | | ||| | | |||||| || | | ||||| ||||| | |
Sbjct 11188 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGTGGGAGCTTAGCTTC 11129
Query 176470 AGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA---GTATCTGCAGCG 176526
| || || ||||| |||||||| ||||||||| ||||| || ||| |||| |
Sbjct 11128 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCTATTGTAGCTGCTACC 11069
Query 176527 ATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCC 176582
| | ||||| | |||| ||| ||||||||||| ||| | ||||||||| ||
Sbjct 11068 A---CTATTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTATGATGGTATACC 11016
>seq67167
Length=42922
Score = 107 bits (118), Expect = 2e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 176958 CGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGG 177017
|| |||||| ||||| || ||||| | || | ||| || ||| ||| ||||
Sbjct 34621 CGATTTCAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGC 34562
Query 177018 AGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 177077
|||||| |||| ||||| ||||||||||||||||||||||| || ||||||||||| ||
Sbjct 34561 TGATATCATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAA 34502
Query 177078 CTTCCCACTTGACCTTGCTGCT 177099
||||| || ||||| | ||||
Sbjct 34501 TTTCCCTCTAGACCTAGTTGCT 34480
>seq57833
Length=3807
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 176356 GAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTC 176415
||||| ||| | ||||| |||||| | || || || || || || |||| |||| |
Sbjct 210 GAAGCGGCATCCGTTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTA 151
Query 176416 CACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTA 176475
|||||| | | || | | ||||||||| || | ||||| ||||| | | | |
Sbjct 150 CACTTCTTACTTAGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTTTG 91
Query 176476 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTT 176535
|| ||||| |||||||| ||||||||| || || || || | || || | || |||
Sbjct 90 GGTATGCGACCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 31
Query 176536 TTCCTCGTCTATCCATTCGGTCAAGGA 176562
||| | |||| ||| |||||||||||
Sbjct 30 TTCTTGATCTACCCAATCGGTCAAGGA 4
>seq77419
Length=2309
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 176571 TGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGA 176630
||||||||||||||| || || || ||||| |||||||| ||| |||||||||| || ||
Sbjct 2309 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGA 2250
Query 176631 GCACAACAT 176639
|||||||||
Sbjct 2249 GCACAACAT 2241
>seq71024
Length=48960
Score = 82.4 bits (90), Expect = 9e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634
||||||||||| || | || ||||| |||||||| ||| ||||||| || | |||||
Sbjct 13701 GGTATGCCTCTAGGAACCTCTGGTACTTTCAACTTCATGATTGTATTTCAGGTTGAGCAT 13760
Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694
|||| || |||||| |||| || ||| | || ||||| || || || || | || |
Sbjct 13761 GACATCCTTATGCACTCATTTCACATGTTAGGTGTAGCTGGGGTATTCGGCAGCTCCATA 13820
Query 176695 TTCTCAGCAATGCACGGAAGTCTTGTTACTTCT 176727
||| || ||||| || | | || ||||||
Sbjct 13821 TTCAGTGCTATGCATGGTTCTTTGGTAACTTCT 13853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 602896171088640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |