Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq72083 221 1e-52 seq65532 199 5e-46 seq56894 187 3e-42 seq73955 161 1e-34 seq69198 161 1e-34 seq66950 145 9e-30 seq26852 129 7e-25 seq67167 107 2e-18 seq57833 95.1 1e-14 seq77419 84.2 3e-11 seq71024 82.4 9e-11 >seq72083 Length=18787 Score = 221 bits (244), Expect = 1e-52 Identities = 269/364 (74%), Gaps = 2/364 (1%) Strand=Plus/Plus Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || || ||||| ||||| || | ||||||| |||| | ||||| ||||| Sbjct 7344 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCAGTCAAGAGGAAGAA 7403 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || || || || ||| | || || ||||| ||||| || || ||| |||| |||||| | Sbjct 7404 ACTTATAATATCGTACCCGCTCATGGTTATTTTGGACGACTGATCGTCCAATATGCTAAT 7463 Query 176857 TTCAATAACTCA-AGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTG 176915 ||||| || || | || | |||||| || | || || | || || || | ||||| Sbjct 7464 TTCAAAAATTCCCATTCGT-TACACTTCATCTTAGCTGCTTAGCCTGTAGTAGGTATCTG 7522 Query 176916 GTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 176975 ||| ||||| | ||| | |||| ||||| |||||||| ||||||||||| |||||||| Sbjct 7523 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 7582 Query 176976 GTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGC 177035 ||||| | || | ||| || ||| ||| |||| |||||| |||||||||| Sbjct 7583 ATCTGTAGTTGATAGTCAAGGTTGTGTAATTAATACTTGGGCTGATATCATTAACCGTGC 7642 Query 177036 AAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 177095 ||||||||||||||| ||||||| || ||||||||||| || ||||| || ||||| || Sbjct 7643 TAACCTTGGTATGGAATTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 7702 Query 177096 TGCT 177099 | || Sbjct 7703 TACT 7706 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/279 (69%), Gaps = 9/279 (3%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTG-CTGCAGCATGT 176205 ||||| |||| ||||||||||| | ||||| || | | || | || | ||| | | Sbjct 6662 TTTACATTGGATGGTTTGGTGTTTTGATGATCCC--GAC--CTTATTGACCGCAACTTCC 6717 Query 176206 ---TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCA 176262 ||||| ||| || ||||| || || || || ||||| || |||||||| | ||| Sbjct 6718 ATATTTATTACTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGTACCC 6777 Query 176263 GTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCA 176322 | || ||||| |||| || |||||||| || || |||| || | || | || Sbjct 6778 ATTTCATGATCTTTACTTTACGGAAACAATATTATTTCAGTGCCATTATTCTTACT-TCT 6836 Query 176323 AACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTC 176382 || || || | ||||| |||||||||||||||| ||| | ||||| |||||| | Sbjct 6837 GCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGTGGCATCCGTTGATGAATGGTTA 6896 Query 176383 TACAATGGAGGACCATACCAACTCGTTGTATTCCACTTC 176421 || || || || || || |||| |||| | |||||| Sbjct 6897 TATAACGGTGGTCCTTATGAACTAATTGTTCTACACTTC 6935 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 |||||| | | || ||||||||||||||| ||| ||||||||||||||||| || || Sbjct 7140 GTTTTCTTGATATACCCATTCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 7199 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATT 176621 || ||||| |||||||| ||| ||||||| Sbjct 7200 TCTGGTACTTTCAACTTCATGATTGTATT 7228 >seq65532 Length=34246 Score = 199 bits (220), Expect = 5e-46 Identities = 224/300 (75%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 176800 TACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 176859 || || || |||| || || ||||| ||||| | | |||||||| |||||| |||| Sbjct 2941 TATAATATCGTAGGCGCTCATGGTTATTTTGGCCCATTGATCTTCCAATATGCTAGTTTC 3000 Query 176860 AATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTT 176919 || || || | | ||||||||||| || || | || || || | |||| ||| Sbjct 3001 AACAATTCCCGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTC 3060 Query 176920 ACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 176979 ||||| | ||| | |||| ||||| |||||||| ||||||||||| |||||||| ||| Sbjct 3061 ACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCT 3120 Query 176980 GTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAAC 177039 || | || | ||| || ||| ||| |||| |||||| |||||||||| ||| Sbjct 3121 GTAGTTGATAGTAAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAAC 3180 Query 177040 CTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 |||||||||||||||||||| || ||||||||||| || ||||| || ||||| |||||| Sbjct 3181 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCT 3240 >seq56894 Length=101133 Score = 187 bits (206), Expect = 3e-42 Identities = 251/346 (73%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 176473 CTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCA 176532 || || ||||| |||||||| ||||||||| || || | || | || || | || Sbjct 63395 CTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACCGCT 63454 Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 ||||| | |||| ||| || |||||||| ||| ||||||||||||||||| || || Sbjct 63455 ATTTTCTTGATCTACCCAATCAGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 63514 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652 || ||||| |||||||| ||| |||||||||| || ||||||||||| || |||||| || Sbjct 63515 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACTCA 63574 Query 176653 TTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT-TTCTCAGCAATGCACGG 176711 || || ||| | || ||||| | | ||| || || | |||| ||| || ||||| || Sbjct 63575 TTTCACATGTTAGGCGTAGCTG--GGGTTCGGCGGCT-TCTTATTCAGTGCTATGCATGG 63631 Query 176712 AAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGG 176771 | || |||||| | | || || || || ||||| ||||| || | || Sbjct 63632 TTCCTTGGTAACTTCTAGTTTGATGAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 63691 Query 176772 TTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCA 176817 ||||| |||||| ||||| ||||| || || || || ||||| ||| Sbjct 63692 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCA 63737 >seq73955 Length=113899 Score = 161 bits (178), Expect = 1e-34 Identities = 189/253 (75%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 176823 TTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC-AAGAAGTCTTCACT 176881 ||| ||||| || | |||||||| |||||| |||||| || || || || | |||| Sbjct 50342 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCCAATTCGT-TACACT 50284 Query 176882 TCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAA 176941 ||||||| || || | || || || | | |||||| ||||| | ||| | |||| | Sbjct 50283 TCTTCCTAGCTGCTTGGCCTGTAGTAGGTAACTGGTTCACTGCTTTAGGTATCAGCACTA 50224 Query 176942 TGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAG 177001 |||| |||||||| ||||||||||| |||||||| ||||| | || | | | | Sbjct 50223 TGGCTTTCAACCTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGATCGTG 50164 Query 177002 TGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACG 177061 | ||| ||| | || |||||| |||||||||| ||||||||||||||||||||||| | Sbjct 50163 TAATTAATACTTAGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 50104 Query 177062 AGCGTAATGCTCA 177074 | |||||| |||| Sbjct 50103 AACGTAATACTCA 50091 >seq69198 Length=26917 Score = 161 bits (178), Expect = 1e-34 Identities = 232/324 (72%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 |||||| | |||| ||| ||||| ||||| ||| ||| ||||||||||||| || || Sbjct 7117 GTTTTCTTGATCTACCCAATCGGTTAAGGAAGTTTTTCTAATGGTATGCCTCTAGGAATC 7058 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652 || ||||| || || || ||| |||||||||| || ||||||||||| || || ||| || Sbjct 7057 TCTGGTACTTTTAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACTCA 6998 Query 176653 TTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAG--CAATGCACG 176710 ||||| ||| | || ||||| || || || || || ||| || |||| | ||||| | Sbjct 6997 TTCCA-ATGTTGGGCGTAGCTGGGGTATTCGGCGG--CTCCTTATTCAGTTCTATGCATG 6941 Query 176711 GAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACG 176770 | | || |||||| | | | || || || ||||| ||||| || | Sbjct 6940 GTTCCTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAA 6881 Query 176771 GTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTG 176830 |||||| ||| || ||||| ||| || || || || || |||||||| ||||| ||| Sbjct 6880 GTTACAGATTTGGTCAAGAGACAGAAACTTATAATATCGTTGCTGCACATGGTTATTTTA 6821 Query 176831 GTCGTCTTATCTTCCAGTATGCTT 176854 | || | |||||||| |||||| Sbjct 6820 GCCGATTGATCTTCCAACATGCTT 6797 >seq66950 Length=22296 Score = 145 bits (160), Expect = 9e-30 Identities = 181/247 (73%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 176735 TTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAG 176794 |||| || || || ||||| ||||| || | ||||||| |||| | ||||| |||| Sbjct 3493 TTAGGGAAACTACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCAGTCAAGAGGAAG 3552 Query 176795 AGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTT 176854 | || || || || ||||| || || ||||| ||||| || | |||||||| |||||| Sbjct 3553 AAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 3612 Query 176855 CTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCT 176914 ||||||||| || | | ||||||||||| || || | || || || | |||| Sbjct 3613 GTTTCAATAAATCCCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCT 3672 Query 176915 GGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACC 176974 |||| ||||| | | | | |||| ||||| |||||||| ||||||||||| |||||| Sbjct 3673 GGTTCACTGCTTTAGAT-ATAGCACTATGGCTTTCAACCTAAACGGTTTCAATTTCAACA 3731 Query 176975 AGTCTGT 176981 | | ||| Sbjct 3732 AATTTGT 3738 >seq26852 Length=33301 Score = 129 bits (142), Expect = 7e-25 Identities = 243/356 (68%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 176230 CCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAAC 176289 || || || ||||| || |||||| | ||||| | |||||| |||| | |||||| Sbjct 11368 CCTCCAGTAGATATTGATGGTATTTGTGAACCCATTTTTGGATCTTTACTTCACGGAAAC 11309 Query 176290 AACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCA 176349 || || || ||||| | | | || | || | || || | | ||||| |||||| Sbjct 11308 AATATTATTTCAGGTGTCATTATTCCTACTTCTACAGCTATAAGTTTGCACTTTTACCCA 11249 Query 176350 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTT 176409 || | | |||| ||| | |||| |||||| | || ||||| || || || |||| || Sbjct 11248 ATTTAGAAAGCGGCATCCATTGATGAATGGTTATATAATGGTGGTCCTTATGAACTAATT 11189 Query 176410 GTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTAC 176469 || | |||||| | | ||| | | |||||| || | | ||||| ||||| | | Sbjct 11188 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATAGGTCATGAGTGGGAGCTTAGCTTC 11129 Query 176470 AGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA---GTATCTGCAGCG 176526 | || || ||||| |||||||| ||||||||| ||||| || ||| |||| | Sbjct 11128 CGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCTGCTCCTATTGTAGCTGCTACC 11069 Query 176527 ATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCC 176582 | | ||||| | |||| ||| ||||||||||| ||| | ||||||||| || Sbjct 11068 A---CTATTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTATGATGGTATACC 11016 >seq67167 Length=42922 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 176958 CGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGG 177017 || |||||| ||||| || ||||| | || | ||| || ||| ||| |||| Sbjct 34621 CGATTTCAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGC 34562 Query 177018 AGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAA 177077 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||||||| || Sbjct 34561 TGATATCATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAA 34502 Query 177078 CTTCCCACTTGACCTTGCTGCT 177099 ||||| || ||||| | |||| Sbjct 34501 TTTCCCTCTAGACCTAGTTGCT 34480 >seq57833 Length=3807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 176356 GAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTC 176415 ||||| ||| | ||||| |||||| | || || || || || || |||| |||| | Sbjct 210 GAAGCGGCATCCGTTGATGAATGGTTATATAACGGTGGTCCTTATGAACTAATTGTTCTA 151 Query 176416 CACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTA 176475 |||||| | | || | | ||||||||| || | ||||| ||||| | | | | Sbjct 150 CACTTCTTACTTAGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGCTTCCGTTTG 91 Query 176476 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTT 176535 || ||||| |||||||| ||||||||| || || || || | || || | || ||| Sbjct 90 GGTATGCGACCTTGGATTGTTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 31 Query 176536 TTCCTCGTCTATCCATTCGGTCAAGGA 176562 ||| | |||| ||| ||||||||||| Sbjct 30 TTCTTGATCTACCCAATCGGTCAAGGA 4 >seq77419 Length=2309 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 176571 TGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGA 176630 ||||||||||||||| || || || ||||| |||||||| ||| |||||||||| || || Sbjct 2309 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGA 2250 Query 176631 GCACAACAT 176639 ||||||||| Sbjct 2249 GCACAACAT 2241 >seq71024 Length=48960 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 176575 GGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCAC 176634 ||||||||||| || | || ||||| |||||||| ||| ||||||| || | ||||| Sbjct 13701 GGTATGCCTCTAGGAACCTCTGGTACTTTCAACTTCATGATTGTATTTCAGGTTGAGCAT 13760 Query 176635 AACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTT 176694 |||| || |||||| |||| || ||| | || ||||| || || || || | || | Sbjct 13761 GACATCCTTATGCACTCATTTCACATGTTAGGTGTAGCTGGGGTATTCGGCAGCTCCATA 13820 Query 176695 TTCTCAGCAATGCACGGAAGTCTTGTTACTTCT 176727 ||| || ||||| || | | || |||||| Sbjct 13821 TTCAGTGCTATGCATGGTTCTTTGGTAACTTCT 13853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602896171088640