Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq73807 89.7 4e-13 >seq73807 Length=69832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || |||||||||||||| |||| | || || |||||| | Sbjct 39154 ATGCAGATCTTTGTCAAGACTCTTACTGGGAAGACCGTTACCCTAGAAGTAGAAAGCTCT 39095 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | || || || || || ||||||||||| |||| || | Sbjct 39094 GATACGATTGATAAC--GTTAAGGCTAAGATTCAAGACAAAGAAGGCATTCCCCCTGACC 39037 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| || | || |||||||| ||||| | || || | | | |||| | ||||| Sbjct 39036 AGCAGCGTCTGATATTTGCCGGTAAACAGCTTGAGGATGGTAGGACACTTG-CTGATTAT 38978 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| ||| ||| |||||||||| ||||||||| | || ||| Sbjct 38977 AACATCCAAAAGGAGTCAACTCTGCATTTGGTGTTGCGTTTGAGGGGAGGC 38927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355518461436954