Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq73807 122 7e-23
>seq73807
Length=69832
Score = 122 bits (134), Expect = 7e-23
Identities = 118/151 (78%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100
|| ||||||| || |||||| || || || ||||||||||| || || ||| ||||
Sbjct 38913 ACGAAAATTTG--CATGCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTT 38970
Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160
| || |||||||| |||||||| | | || ||||||||||| || |||||||| ||||
Sbjct 38971 GGATGTTATAATCAGCAAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGAC 39030
Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191
|||||||||| | ||| | || ||||||||
Sbjct 39031 GCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 39061
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/206 (70%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| ||||| ||||| || || ||||| || || | || |||||||||
Sbjct 39408 TGAAGGGTGGACTCCTTTTGAATATTGTAGTCTGCAAGGGTACGGCCATCCTCAAGCTGT 39467
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || ||||| || | ||| ||||| || | ||| | | ||| |||||| |||||
Sbjct 39468 TTCCCAGCAAAAATCAAACGTTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGAATTTTG 39527
Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258
||||| | | | || || ||| || || |||| ||||| | |||||
Sbjct 39528 GCTTTGACATTGTCAATTGTGTCTGAGCT---TTCGACTTCCAGGGTGATGGTCTTTCCT 39584
Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284
||||| || ||||| |||||||||||
Sbjct 39585 GTCAGGGTCTTAACGAAGATTTGCAT 39610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429130447130726
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |