Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq73807 122 7e-23 >seq73807 Length=69832 Score = 122 bits (134), Expect = 7e-23 Identities = 118/151 (78%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| || || || ||||||||||| || || ||| |||| Sbjct 38913 ACGAAAATTTG--CATGCCTCCCCTCAAACGCAACACCAAATGCAGAGTTGACTCCTTTT 38970 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || |||||||| |||||||| | | || ||||||||||| || |||||||| |||| Sbjct 38971 GGATGTTATAATCAGCAAGTGTCCTACCATCCTCAAGCTGTTTACCGGCAAATATCAGAC 39030 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTC 39191 |||||||||| | ||| | || |||||||| Sbjct 39031 GCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 39061 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| ||||| || || ||||| || || | || ||||||||| Sbjct 39408 TGAAGGGTGGACTCCTTTTGAATATTGTAGTCTGCAAGGGTACGGCCATCCTCAAGCTGT 39467 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || | ||| ||||| || | ||| | | ||| |||||| ||||| Sbjct 39468 TTCCCAGCAAAAATCAAACGTTGCTGATCAGGGGGAATTCCCTCCTTGTCCTGAATTTTG 39527 Query 39202 TGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCC 39258 ||||| | | | || || ||| || || |||| ||||| | ||||| Sbjct 39528 GCTTTGACATTGTCAATTGTGTCTGAGCT---TTCGACTTCCAGGGTGATGGTCTTTCCT 39584 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || ||||| ||||||||||| Sbjct 39585 GTCAGGGTCTTAACGAAGATTTGCAT 39610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429130447130726