Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq35021 226 4e-54 seq39070 205 1e-47 seq50219 111 2e-19 seq42762 107 3e-18 seq73464 102 1e-16 seq67281 96.9 5e-15 seq40763 96.9 5e-15 >seq35021 Length=73443 Score = 226 bits (250), Expect = 4e-54 Identities = 577/872 (66%), Gaps = 12/872 (1%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||||||||| ||||| | |||||||| ||||| || || || | ||| || | Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| |||| |||||||| | ||||||| || ||| | |||| || || || | Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | ||| |||||||||||||| || || |||| | || | ||||| || | || Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT- 48088 | || ||||| || | || ||| |||||| || |||||| ||| || Sbjct 65940 GCACAAGGCAGAGCATCGCAGACGAATTCTCTCTCGATATCAACTGCATCCGCTACGATT 65999 Query 48089 -CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147 | || | | ||||||| || | || | | | | | ||| || || | Sbjct 66000 CCCCTGATTC--TTTCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAAGCGA 66057 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 |||| || || |||||||| |||| ||||| ||||| || || || || ||||||| Sbjct 66058 AATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCGGGCA 66117 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA-GAAAAGAATATGCCT 48266 | || |||||||| || | ||||||||| || || ||| ||| || || ||||| ||| Sbjct 66118 TAAGGCCACGTTTCTTTAACCAAAATATCGC-GCAAAAACTCCCCGAGAAAAATATTCCT 66176 Query 48267 TCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GTTGTGTATCCAC 48323 || || || || ||| | | | | || | || ||| | || ||||| Sbjct 66177 TCGACACAAGCGAAGGCG---ACTATACGTTCGGCAAAGGATTCCGAGCCGTCGATCCAA 66233 Query 48324 CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 || ||||||| | |||||||| | || ||||| |||||||| || || |||||| Sbjct 66234 CGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGAAAGAGT 66293 Query 48384 AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 ||| || |||||| || || | ||||| || | || ||||||||||| |||||| Sbjct 66294 CTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATCTCGGAG 66353 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 |||||||| || || || || || || |||||||| | ||||| | ||||| || Sbjct 66354 TGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATCTGAACT 66413 Query 48504 TCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAAT 48563 || | ||||| | || | |||||| || || |||||| ||| || || || Sbjct 66414 TCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCGAAGAAG 66473 Query 48564 GCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATA 48623 || | || || | || || | |||| || ||| || | ||| | | || Sbjct 66474 GCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGACGGAGG 66533 Query 48624 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATA 48683 || | |||| ||| || || || || ||||| || || |||||||| || || ||||| Sbjct 66534 TCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTGTACATC 66593 Query 48684 TTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | ||| || | | |||||| |||||||| || Sbjct 66594 TCCCAAATCTGAGGGTATTGAATTGGGAACAT 66625 >seq39070 Length=11651 Score = 205 bits (226), Expect = 1e-47 Identities = 588/895 (66%), Gaps = 22/895 (2%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 ||||||||||| || || | ||||| || |||||||| || || | ||| || Sbjct 8225 TTTTGATATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAAC 8166 Query 47910 TCCATAAAATCAAATGGATTAACTG--CATTATAAAtttttttAAATCCTAATTCTGAAA 47967 ||||| |||| || || || ||| ||| ||| |||||| | |||| || || | Sbjct 8165 TCCATCCAATCGAACGGGTT--CTGAACATCATACATTTTTCCATATCCCAAAGCTCCCA 8108 Query 47968 TCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAA 48027 || ||| |||||||| ||||| || || |||| | || | ||||| || | | Sbjct 8107 GCAATCTGTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCA 8048 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTA 48087 || | ||||| || || | ||||| | || ||| || ||||| | | | Sbjct 8047 GTGCACAGGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACGA 7988 Query 48088 T--CGATGTTACCGTTTCCTCACTTGG---TGGATACAACAAA-TGTTTAAACATTAAAC 48141 | | || | | ||||||| || | || || || | ||| | | ||| | Sbjct 7987 TTCCCCTGATTC--TTTCCTCGCTCAGCTTTGACCGCAGCAGACTGT----AGAGTAAGC 7934 Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201 | ||||| |||||||| || |||||||||| | |||||| ||||| || || || | | Sbjct 7933 AGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATC 7874 Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATA 48261 ||||||| || || ||||| || ||||||||||| || ||| || || || |||| Sbjct 7873 CGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATA 7814 Query 48262 TGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTC---GTTGTGTA 48318 | || || || ||||| ||| | | | | ||| | || || ||| | | | Sbjct 7813 TTCCCTCAACACAAGCAAAGGCG--ACGACACGCTCAGCAA-AGGATTCCGAGCCATCGA 7757 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 |||| || ||||||||| |||||||| | |||||||| || || || || ||| || Sbjct 7756 TCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAA 7697 Query 48379 AGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 |||| | || || | ||| || | ||| | || | || ||||||||||| | Sbjct 7696 AGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATCT 7637 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498 ||||||||||||| || || || || ||||| |||||||| | || |||| || | Sbjct 7636 CGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATTT 7577 Query 48499 GTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558 | || || | ||||| | || | |||||| || || |||||| ||| |||| Sbjct 7576 GAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCAA 7517 Query 48559 AAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCAT 48618 |||| || | || || | || || | |||| || ||| || | ||| | Sbjct 7516 AAAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGGC 7457 Query 48619 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTAT 48678 || || | || | ||| ||||| || |||||||| || || ||||| || || || | Sbjct 7456 GGAGGTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGT 7397 Query 48679 ACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATT 48733 |||| | ||| || | | |||||| |||||||| ||| |||| | |||||| Sbjct 7396 ACATTTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATT 7342 >seq50219 Length=1725 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 |||||||| || || || | |||||||| || ||||| |||| ||| |||||| || Sbjct 700 TCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGGAGAT 759 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 |||||||| || | || ||||| | |||| ||| ||| | | ||||||||||||| Sbjct 760 TCATTTGGACAAAACATAGACCATTGCCCATTAGCCTCAACCCTCTGCATAAAGAGATCA 819 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 || | |||||||||| ||| |||||||| | | |||||||| Sbjct 820 GGCACCCATAGAGCATAAAAAAGATCTCGAGCCCGGTGTTCTTC 863 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | || |||| ||| | || | | |||||||| ||| || Sbjct 1202 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 1261 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| ||||||||||| ||| ||||||||| | ||||| || || || || Sbjct 1262 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 1321 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || ||||| || || || | ||| || || | ||||| || || Sbjct 1322 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 1381 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || |||||||| ||||| | |||||| |||||| Sbjct 1382 TCCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1424 >seq42762 Length=1633 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 |||||||| || || || | |||||||| || ||||| |||| ||| |||||| || Sbjct 612 TCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGGAGAT 671 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 |||||||| || | || ||||| | |||| | |||||| | | ||||||||||||| Sbjct 672 TCATTTGGACAAAACATAGACCATTGCTCATCATTCTTAACCCTCTGCATAAAGAGATCA 731 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCG 78052 || | ||| |||||| ||| |||||||| Sbjct 732 GGCACCCAAAGAGCATAAAAAAGATCTCG 760 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | || |||| ||| | || | | |||||||| ||| || Sbjct 1110 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 1169 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| ||||||||||| ||| ||||||||| | ||||| || || || || Sbjct 1170 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 1229 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || ||||| || || || | ||| || || | ||||| || || Sbjct 1230 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 1289 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || |||||||| ||||| | |||||| |||||| Sbjct 1290 TCCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1332 >seq73464 Length=101316 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 |||||||| || || || | |||||||| || ||||| |||| ||| |||||| || Sbjct 34257 TCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGGAGAT 34198 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 |||||||| || | || || || | || || || ||| | | ||||||||||||| Sbjct 34197 TCATTTGGACAAAACATAGATCATTGTCCTTCACTCTCAACCCTCTGCATAAAGAGATCA 34138 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 || | ||| |||||| ||| |||||||| | | ||||||||| Sbjct 34137 GGCACCCAAAGAGCATAAAAAAGATCTCGAGCCCGATGTTCTTC 34094 >seq67281 Length=7088 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | || |||| ||| | || | | |||||||| ||| || Sbjct 7044 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 6985 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| ||||||||||| ||| ||||||||| | ||||| || || || || Sbjct 6984 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 6925 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || ||||| || || || | ||| || || | ||||| || || Sbjct 6924 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 6865 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || |||||||| ||||| | |||||| |||||| Sbjct 6864 TCCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 6822 >seq40763 Length=101153 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | || |||| ||| | || | | |||||||| ||| || Sbjct 101109 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 101050 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| ||||||||||| ||| ||||||||| | ||||| || || || || Sbjct 101049 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 100990 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || ||||| || || || | ||| || || | ||||| || || Sbjct 100989 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 100930 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || |||||||| ||||| | |||||| |||||| Sbjct 100929 TCCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 100887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693980192185280