Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq39070 190 3e-43 seq35021 163 4e-35 seq67281 114 2e-20 seq50219 114 2e-20 seq42762 114 2e-20 seq40763 114 2e-20 seq73464 98.7 1e-15 >seq39070 Length=11651 Score = 190 bits (210), Expect = 3e-43 Identities = 580/891 (65%), Gaps = 14/891 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| ||||| || || | ||||| || |||||||| || || | ||| || Sbjct 8225 TTTTGATATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAAACTAATCAAC 8166 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||| ||||| || ||||| ||| |||||| | |||| || || | | Sbjct 8165 TCCATCCAATCGAACGGGTTCTGAACATCATACATTTTTCCATATCCCAAAGCTCCCAGC 8106 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||| |||||||| ||||| || ||| |||| | || | ||||| || | ||| Sbjct 8105 AATCTGTCTGCAACAAATTCAATGTACTGGCTCATTAGGTCTCCGTTCATCCCCACCAGT 8046 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||||| || || | ||||| | |||||| || ||||| | | || Sbjct 8045 GCACAGGGTAGGGCGTCACACACGAACTCCTTCTCAATATCCACTGCATCAGCAACGATT 7986 Query 46579 GATGTTACTGTTTCCTCACTTGG---TGGATGCATCAAA-TGTTTAAACATTAAACATGC 46634 | | | ||||||| || | || ||| || | ||| | | ||| || || Sbjct 7985 CCCCTGATTCTTTCCTCGCTCAGCTTTGACCGCAGCAGACTGT----AGAGTAAGCAGGC 7930 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||| |||||||| ||||||||||||| | |||||| ||||| || || || | || || Sbjct 7929 AAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGTTAATCCGGG 7870 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || || || || || ||||||||||| || ||| || || || ||||| || Sbjct 7869 CATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATTCC 7810 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCA 46811 || ||| || || ||||| | | | ||| | || || || || ||||| Sbjct 7809 CTCAACACAAGCAAAGGCGACGA--CACGCTCAGCAAA-GGATTCCGAGCCATCGATCCA 7753 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 | | ||||||| ||||| || | |||||||| || || || || ||| |||||| Sbjct 7752 ACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGCACGAAAGAG 7693 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 | || || || ||| || | || | || | || ||||||||||| || || Sbjct 7692 CCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATACATCTCGGA 7633 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 ||||| || || ||||| || ||||| |||||||| | || || | ||| || || Sbjct 7632 GTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGAAATTTGAAC 7573 Query 46992 CTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAA 47051 ||| | ||||| | | | |||||| || || |||||| ||| |||||||| Sbjct 7572 TTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGCGGCAAAAAA 7513 Query 47052 TGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGAT 47111 || | || || | || || | || |||| ||| || | ||| | || Sbjct 7512 GGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTTAGGGCTTCCCATTGGCGGAG 7453 Query 47112 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACAT 47171 || | || | ||| ||||| || ||||||||||| || ||||| || || || ||||| Sbjct 7452 GTCCTGAGAGAGATCGACTTCCTCGGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 7393 Query 47172 ATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 | ||| || | | | ||||| || || || ||| |||| | |||||| Sbjct 7392 TTCCCAAATCTGAGGGTATTGAATTGGGAACATACAGAATCGGTCTGGATT 7342 >seq35021 Length=73443 Score = 163 bits (180), Expect = 4e-35 Identities = 566/878 (64%), Gaps = 24/878 (3%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| ||||| || || | |||||||| ||||| || || || | ||| || | Sbjct 65760 TTTTGATATTCTCCCACTCTCTTCTCGAAGAAATTCGTCTTCCCCTGCAAACTAATCAAT 65819 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||| || ||||| ||||||||| || ||| | |||| || || || | Sbjct 65820 TCCATCCAATCGAATGGATTCAGAACATTATACATCTTTCGATATCCCAAAGCTTCAAGC 65879 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||| |||||||||||||| || ||| |||| | || | ||||| || | || Sbjct 65880 AATCTGTCTGCAACGAATTCAATGTACTGGCTCATTAGATCTCCGTTCATACCAACTAGG 65939 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || ||||| || | || ||| || ||| || ||||||| || | Sbjct 65940 GCACAAGGCAGAGCATCGCAGACGAATTCTCTCTCGATATCAACTGCATCCGCTA----C 65995 Query 46579 GATGTTACTGTTTCCTCACTTGGTG-GATGCATC---AAATGTTTAAACATTAAACATGC 46634 ||| ||| ||| | || || | | |||| | | | | | | ||| || || Sbjct 65996 GATTCCCCTGATTCTTTCCTCGGAAAGTTTCATCCGCAGAAGACTGTAGAGTAAGCAAGC 66055 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||||| || || || ||||| |||| ||||| ||||| || || || || || || Sbjct 66056 GAAATCGCAGTGGAGACCTTCGTCTCGGGAGATTAACTCGTTCGAGAAGGTTAGTCCGGG 66115 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA-GAAAAGAATATGC 46753 ||| || ||||| || || | ||||||||| || || ||| ||| || || ||||| | Sbjct 66116 CATAAGGCCACGTTTCTTTAACCAAAATATCGC-GCAAAAACTCCCCGAGAAAAATATTC 66174 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA------- 46806 |||| ||| ||||| ||||| | | || | | || ||| || Sbjct 66175 CTTCGACACAAGCGAAGGCGACTATACGTTCGGCAAA---GG----ATTCCGAGCCGTCG 66227 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | | ||||| | ||||| || | || ||||| |||||||| || || | Sbjct 66228 ATCCAACGAAGTGCCCATTTGGCCTTCTTTTCAACGCAAGGAATTGTTTCGATTGCGCGA 66287 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 ||||| ||| || |||| || || | || | || | || ||||||||||| Sbjct 66288 AAGAGTCTGTTCTTCTCATTGGAGTCCTTTATGTAAGACTCGAGCAAGAGACTATACATC 66347 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || ||||| || || || || || || || |||||||| | ||||| | |||| Sbjct 66348 TCGGAGTGAATATTCTCGATGGCGATTTGGAAACCGTAAAAGGCACGGGCTTCGGAAATC 66407 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || || ||| | ||||| | | | |||||| || || |||||| ||| || Sbjct 66408 TGAACTTCTTTCATGAATCGACCGGCGAGATTCTCCAAAACAATGCCATCAGAAGCGGCG 66467 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || || || | || || | || || | || |||| ||| || | ||| | | Sbjct 66468 AAGAAGGCGAGAACGTGAGTGATGAAGTGACGCTCGTCGGGAGTGAGGGCTTCCCATTGA 66527 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 || || | |||| ||| || || || || |||||||| || |||||||| || || Sbjct 66528 CGGAGGTCCTGAGATAGATCGACCTCCTCGGCGGTCCAGAAGGAAGCCTCTGCCTTCTTG 66587 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 ||||| | ||| || | | | ||||| || || || || Sbjct 66588 TACATCTCCCAAATCTGAGGGTATTGAATTGGGAACAT 66625 >seq67281 Length=7088 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||||||| ||| | || | | |||||||| |||||| Sbjct 7044 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 6985 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||| ||||||||| || || || || || ||| Sbjct 6984 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 6925 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || ||| || ||||| || ||| ||| | |||||| || | || ||||| || Sbjct 6924 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 6865 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || || ||||| ||||| | |||||| |||||| Sbjct 6864 TCCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 6822 >seq50219 Length=1725 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||||||| ||| | || | | |||||||| |||||| Sbjct 1202 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 1261 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||| ||||||||| || || || || || ||| Sbjct 1262 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 1321 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || ||| || ||||| || ||| ||| | |||||| || | || ||||| || Sbjct 1322 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 1381 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || || ||||| ||||| | |||||| |||||| Sbjct 1382 TCCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1424 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 |||||||| || || | | |||||||| || ||||| |||| ||| |||||| || Sbjct 700 TCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGGAGAT 759 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | || ||||| | |||| ||| ||||| | ||||||||||||| Sbjct 760 TCATTTGGACAAAACATAGACCATTGCCCATTAGCCTCAACCCTCTGCATAAAGAGATCA 819 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCG 76647 || | |||||||||| ||| |||||||| Sbjct 820 GGCACCCATAGAGCATAAAAAAGATCTCG 848 >seq42762 Length=1633 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||||||| ||| | || | | |||||||| |||||| Sbjct 1110 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 1169 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||| ||||||||| || || || || || ||| Sbjct 1170 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 1229 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || ||| || ||||| || ||| ||| | |||||| || | || ||||| || Sbjct 1230 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 1289 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || || ||||| ||||| | |||||| |||||| Sbjct 1290 TCCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 1332 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 |||||||| || || | | |||||||| || ||||| |||| ||| |||||| || Sbjct 612 TCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGGAGAT 671 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | || ||||| | |||| | |||||||| | ||||||||||||| Sbjct 672 TCATTTGGACAAAACATAGACCATTGCTCATCATTCTTAACCCTCTGCATAAAGAGATCA 731 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCG 76647 || | ||| |||||| ||| |||||||| Sbjct 732 GGCACCCAAAGAGCATAAAAAAGATCTCG 760 >seq40763 Length=101153 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||||||| ||| | || | | |||||||| |||||| Sbjct 101109 ACCTCCTTGATCAACATAACGAGCAGTGTCATTGAATACCCGTAGCATTGGAACAATGCC 101050 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||| ||||||||| || || || || || ||| Sbjct 101049 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCGCGGATGTTGTGAACAGA 100990 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || ||| || ||||| || ||| ||| | |||||| || | || ||||| || Sbjct 100989 TACGCCAATCCCTCCAGCTGATTTGCTGATAACAGCACATTCCTTAAGGGTATCATATAT 100930 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| || || ||||| ||||| | |||||| |||||| Sbjct 100929 TCCCTCAATGCTGTCATCTTTCATGCACACAAGAAAGCAGCTA 100887 >seq73464 Length=101316 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 |||||||| || || | | |||||||| || ||||| |||| ||| |||||| || Sbjct 34257 TCATATTGGGTGTAAAGTCTCTCAAATTCTTCACCCCAGCAATCAGCCAGTCCAGGAGAT 34198 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | || || || | || || || ||||| | ||||||||||||| Sbjct 34197 TCATTTGGACAAAACATAGATCATTGTCCTTCACTCTCAACCCTCTGCATAAAGAGATCA 34138 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 || | ||| |||||| ||| |||||||| | | | ||||||| Sbjct 34137 GGCACCCAAAGAGCATAAAAAAGATCTCGAGCCCGATGTTCTTC 34094 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | |||| | ||| | | | | ||| |||| |||||| Sbjct 33758 ACCTCCTTGATCAACATAACGAGCAGCATCATTGAATGCCCGTAGCATCGGAACAATGCC 33699 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| ||||||||||| ||| ||||||||| ||||| || || || ||| Sbjct 33698 ATTGGATGTCCCATTTGTTCCTCGAATGTAACTTCCAGTGGCACGGATGTTTTGAACAGA 33639 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || ||| || ||||| || | ||| ||| | |||||| || | | ||||| || Sbjct 33638 TACGCCAATCCCTCCAGCTAATTTGCTGATAACAGCACATTCCTTAAGGTTATCATATAT 33579 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 76983 ||||| || | ||||| | ||| | |||||| |||||| ||| || Sbjct 33578 TCCCTCAATGCGGTCATCTTTAATGCACACAAGAAAGCAGCTACTCATCTG 33528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712227685952640