Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq72241 86.0 5e-12
seq73986 82.4 6e-11
>seq72241
Length=55963
Score = 86.0 bits (94), Expect = 5e-12
Identities = 161/236 (68%), Gaps = 18/236 (8%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACC------GTGGAAA---CG 111150
||||| ||||||||||| || | || || ||||| ||||| || |||| |
Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115
Query 111151 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111210
|| ||| |||| ||| | ||| ||| ||| || |||||||| ||||
Sbjct 40114 GATACCATCGATAATGT---CAAGGCAAAG------ATTCAGGATAAAGAAGGGATTCCT 40064
Query 111211 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCC 111270
||||||||||| || || | ||| || || || |||||||| | ||| | ||
Sbjct 40063 CCGGATCAACAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCT 40004
Query 111271 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|||||||| || ||||| || || || || ||| | |||||||||||| | |||||
Sbjct 40003 GATTATAACATTCAAAAGGAGTCCACTCTTCATCTGGTGTTGCGTCTGAGGGGTGG 39948
>seq73986
Length=64159
Score = 82.4 bits (90), Expect = 6e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252
|| |||||||| |||| |||||| || || || |||| ||| || || |||||||||
Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112
Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312
||| ||| |||| || |||||||| || |||||||| ||||| || || || |||
Sbjct 17111 GATGGCCGTACTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 17052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421403522375152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |