Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq72241 86.0 5e-12 seq73986 82.4 6e-11 >seq72241 Length=55963 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/236 (68%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACC------GTGGAAA---CG 111150 ||||| ||||||||||| || | || || ||||| ||||| || |||| | Sbjct 40174 ATGCAGATTTTTGTCAAGACCCTTACTGGTAAAACTATTACTCTTGAGGTTGAAAGTTCT 40115 Query 111151 GAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCC 111210 || ||| |||| ||| | ||| ||| ||| || |||||||| |||| Sbjct 40114 GATACCATCGATAATGT---CAAGGCAAAG------ATTCAGGATAAAGAAGGGATTCCT 40064 Query 111211 GTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCC 111270 ||||||||||| || || | ||| || || || |||||||| | ||| | || Sbjct 40063 CCGGATCAACAAAGACTGATCTTTGCCGGGAAGCAGTTGGAAGACGGTCGTACTCTAGCT 40004 Query 111271 GATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| || ||||| || || || || ||| | |||||||||||| | ||||| Sbjct 40003 GATTATAACATTCAAAAGGAGTCCACTCTTCATCTGGTGTTGCGTCTGAGGGGTGG 39948 >seq73986 Length=64159 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 || |||||||| |||| |||||| || || || |||| ||| || || ||||||||| Sbjct 17171 GATAAAGAAGGTATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 17112 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| ||| |||| || |||||||| || |||||||| ||||| || || || ||| Sbjct 17111 GATGGCCGTACTTTGGCTGACTATAATATCCAGAAAGAATCAACACTTCACTTGGTTTTG 17052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421403522375152