Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06]
79,302 sequences; 522,653,749 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq39070 152 5e-32
>seq39070
Length=11651
Score = 152 bits (168), Expect = 5e-32
Identities = 297/438 (68%), Gaps = 3/438 (1%)
Strand=Plus/Minus
Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564
||| || ||||| |||||||| ||||||||||| | | ||| || || || || || ||
Sbjct 7938 TAAGCAGGCAAAGTCACAATGGAGGCCTTCATCTCGAGAAATTAACTCGTTCGAGAAGGT 7879
Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAA 23624
|||||| ||||| | || ||||| || | ||||||||| ||| ||| || || ||
Sbjct 7878 TAATCCGGGCATAAGCCCCCGTTTCTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAA 7819
Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684
|| || ||||||||| |||||||| || | ||| | |||| | | | | |
Sbjct 7818 AAATATTCCCTCAACACAAGCAAAGGCGACGACACGCTCAGCAAAGGAT---TCCGAGCC 7762
Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744
| ||||| || |||||| |||||| || ||||| ||| || ||||| ||
Sbjct 7761 ATCGATCCAACGAAGTGCCCAATTGGCCTTCTTTTCAACACAAGGAATGGTCTCAATCGC 7702
Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATA 23804
||||| | || || || ||| |||| || | || | | || ||||||
Sbjct 7701 ACGAAAGAGCCTATGCTTCTCGTCTGAATCCTTTATGTAGGACTCGAGCAATAGACTATA 7642
Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864
||| || || |||||||| || |||||||| ||||| || ||||| | || || ||
Sbjct 7641 CATCTCGGAGTGAATATTCTCGATAGCAATTTGAAAGCCGTAAAAGGCACGGGCCTCTGA 7582
Query 23865 CAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924
| |||||| || || | |||| || | ||| || ||||||||||||| |||
Sbjct 7581 AATTTGAACTTCTTTCATGAATCGGCCGGCAAGATTCTCCAAAACAATACCATCAGAAGC 7522
Query 23925 AGCAAAGAAAGCAAGAAC 23942
||||| || || |||||
Sbjct 7521 GGCAAAAAAGGCGAGAAC 7504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 520971061982800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |