Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Catharanthus_20roseus_20[genbank_20GCA_5F000949345.1_202015-03-06] 79,302 sequences; 522,653,749 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq73807 116 3e-21 seq65811 111 1e-19 seq53817 107 2e-18 seq72241 98.7 9e-16 seq42370 98.7 9e-16 seq71687 93.3 4e-14 seq55661 89.7 5e-13 seq25273 87.8 2e-12 >seq73807 Length=69832 Score = 116 bits (128), Expect = 3e-21 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| ||||| ||| ||||||||| || |||||||| | Sbjct 38699 GCCTCCACGAAGACGAAGAACCAAGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGC 38758 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || |||||||||||||| || || || || | |||||| || | || Sbjct 38759 AAGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGAGG 38818 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 || | ||||||||| ||| ||||||||| || | | ||| || ||| || Sbjct 38819 AATTCCTTCCTTGTCC-TGAATTTTTGCTTTCACATTATCAATAGTATCTGAGCT---CT 38874 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||| || || || || || || || ||||| |||||||| |||||| Sbjct 38875 CCACCTCCAAAGTGATTGTCTTCCCTGTAAGTGTCTTCACGAAAATTTGCATG 38927 >seq65811 Length=66007 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| |||||||||||||| ||||| | Sbjct 54781 CCACCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCC 54840 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| || |||||||| ||||| || |||| | ||| ||||| | ||| Sbjct 54841 AAGGTGCGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 54900 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | || |||| ||| | | | |||||| ||| || Sbjct 54901 ATACCCTCCTTGT-CTTGAATCTTGGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCAAC 54959 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || ||||| || || || ||||| || || || ||||| Sbjct 54960 CTCCAGGGTGATGGTTTTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 55007 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||| ||||| || ||||||| Sbjct 55009 CCTCCACGGAGACGAAGCACCAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCGGCC 55068 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| |||| ||||||||||| |||||||| |||| | || ||||| | ||| Sbjct 55069 AAGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 55128 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| |||| || | ||| | | | |||||| ||| || Sbjct 55129 ATGCCTTCCTTGT-CTTGAATTTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCAAC 55187 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | ||| || || || || |||| ||||| || || || ||||| Sbjct 55188 TTCGAGCGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATTTGCAT 55235 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| || || ||||| | Sbjct 54354 CCACCACGGAGACGGAGGACAAGATGGAGTGTTGACTCCTTCTGGATATTGTAGTCAGCC 54413 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || |||||||| || || || |||| | ||| ||||| | ||| Sbjct 54414 AAAGTCCTTCCATCTTCCAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGA 54473 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | | ||||||||| ||||||| ||||| | | || | |||| |||| || Sbjct 54474 ATTCCCTCCTTGTCTTGGATTTTTGCCTTCA-CATTGTCAATGGTGTCAGAGCTC---TC 54529 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || ||||| |||| ||||| || || |||||||| Sbjct 54530 CACCTCCAGGGTGATAGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 54580 >seq53817 Length=15024 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | || || || || ||| |||||||| ||||| ||||| | Sbjct 3628 CGCCACCACGGAGGCGAAGAACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 3687 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 || || | |||| ||||||||||| |||||||| || || ||||| ||||||| | Sbjct 3688 CTAGAGTTCTGCCGTCTTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCCGGTG 3747 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| |||| || | || | | | || || || || Sbjct 3748 GGATGCCCTCCTTGTCC-TGAATTTTGGCCTTGACATTGTCAATGGTATCCGAGGATTCG 3806 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || ||||| || || || ||||| |||||||| || Sbjct 3807 ACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCATTTT 3859 >seq72241 Length=55963 Score = 98.7 bits (108), Expect = 9e-16 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| ||||||||||| || ||| |||||| ||||||||||| || | || || || Sbjct 39957 AGACGCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTACGA 40016 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || | |||||| ||||| || ||||| | ||||| |||| |||| | || Sbjct 40017 CCGTCTTCCAACTGCTTCCCGGCAAAGATCAGTCTTTGTTGATCCGGAGGAATCCCTTCT 40076 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCACCTCCACCG 41822 || ||| ||| | ||||| | || | | | || | || || ||||| | | Sbjct 40077 TTATCC-TGAATCTTTGCCTTGAC-ATTATCGATGGTATCAGAACTTTCAACCTCAAGAG 40134 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || |||||||| || || ||||| || ||||||||||| Sbjct 40135 TAATAGTTTTACCAGTAAGGGTCTTGACAAAAATCTGCAT 40174 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | | || ||||| || || ||||||||| || ||||| |||| | Sbjct 40632 CCACCGCGGAGTCTGAGGACAAGATGGAGAGTAGACTCCTTCTGGATATTATAATCGGCG 40691 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||| || ||||||||||| || |||||||| || || | || Sbjct 40692 AGGGTTCGGCCGTCCTCGAGTTGTTTGCCGGCGAAGATTAGGCGCTGCTGATCGGGAGGG 40751 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | || || | || | | | || ||| ||| || Sbjct 40752 ATTCCCTCCTTGT-CTTGAATCTTAGCCTTGACATTGTCGATTGTATCGGAGCTCTCGAC 40810 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || ||||| || || || || ||||| |||||||| || Sbjct 40811 CTCAAGGGTAATTGTCTTACCGGTTAGGGTTTTCACGAAGATCTGCATCTT 40861 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 || || ||||| || || |||||||||||| || || || | ||||| | |||| Sbjct 40191 AAGACAAGATGTAGGGTTGACTCCTTCTGAATATTGTAATCCGCAAGGGTTCTACCGTCT 40250 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| |||||||| || |||||||| || || | |||| | ||||| | | Sbjct 40251 TCCAGCTGCTTCCCGGCGAAAATTAGGCGCTGCTGATCAGGAGGAATTCCTTCCTTAT-C 40309 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| | ||||| | |||| | | | ||| || |||||||| | || || || Sbjct 40310 TTGAATCTTTGCCTTAACGTTGTCAATAGTATCAGAACTTTCCACCTCAAGAGTGATGGT 40369 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || || || || || ||||| ||||| Sbjct 40370 TTTGCCTGTTAGAGTTTTGACAAAAATTTGCAT 40402 >seq42370 Length=41228 Score = 98.7 bits (108), Expect = 9e-16 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||| || ||| |||||| ||||||||||| || | || || | Sbjct 10651 AGACGCAGCACCAGATGAAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAGAGTTCTG 10592 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | |||||| ||||| || |||| | ||| ||||||| |||| | ||| Sbjct 10591 CCATCTTCCAACTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGAATCCCTTCC 10532 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCACCTCCACCG 41822 || ||| ||| | ||||| | ||| | | | ||| | || || ||||| | | Sbjct 10531 TTATCC-TGAATCTTTGCCTTAAC-ATTATCAATTGTATCAGAACTTTCAACCTCAAGAG 10474 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || |||||||| || || ||||| || ||||||||||| Sbjct 10473 TAATGGTTTTACCAGTGAGGGTCTTAACAAAAATCTGCAT 10434 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || |||||||| |||||||| |||| Sbjct 9976 CCACCACGGAGACGAAGAACAAGATGAAGGGTTGATTCCTTCTGTATGTTATAATCGGCT 9917 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || | || ||||||||||| || |||||||| || |||| || Sbjct 9916 AGGGTTCGGCCGTCCTCCAATTGTTTGCCGGCGAAGATAAGGCGCTGCTGATCCGGAGGG 9857 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| || ||| || ||| | | | | | ||| ||| ||| || Sbjct 9856 ATACCCTCCTTATCTTGGATCTTAGCCTTGACATTATCA-ATAGTATCGGAACTCTCAAC 9798 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||||| || || || || || || || ||||| |||||||| Sbjct 9797 CTCGAGAGTTATGGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 9750 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || || ||||| || || ||||||||| ||||| || || | Sbjct 10432 CCACCGCGAAGCCTCAAGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 10373 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| | | || || | |||||| ||||| || ||||||||||| || |||| ||| Sbjct 10372 AAGGTTCTACCATCCTCCAACTGCTTTCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 10313 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA--CTCCA 41813 | | |||||| | | ||| | || || | |||| || | ||| | | ||| | Sbjct 10312 ATCCCCTCCTTAT-CTTGAATCTTCGCCTTAACGTTATCA-ATTGTATCAGAACTCTCGA 10255 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || ||||| ||||| ||||| || || || || || ||||| Sbjct 10254 CCTCCAAGGTAATCGTCTTACCAGTCAGAGTTTTAACAAAGATTTGCAT 10206 >seq71687 Length=64904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| | || | ||||| ||||| || ||||||||| ||||| || || | Sbjct 44684 CGCCACCGCGCAAGCGAAGGACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAATCCG 44743 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | ||| | | || ||||||||||||||||| || || || | ||| || |||| | Sbjct 44744 CTAAGGTCCTGCCTTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGATCCGGTG 44803 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || ||||| || ||| || |||| || | | | || ||| || || Sbjct 44804 GGATGCCTTCCTTATCTTGGATCTTCGCCTTC-ACATTGTCAATGGTATCGGAGGATTCA 44862 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || ||||||||||| || || ||||| |||||||| || Sbjct 44863 ACCTCGAGGGTAATGGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 44915 >seq55661 Length=20824 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| |||||||| ||||| |||| | || || | || || ||| Sbjct 2587 ACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTTAGCTAGTGTTCTGTCATCTTCG 2528 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| ||||||| || || ||||| | ||||| || | ||||||||||||| || Sbjct 2527 AGCTGCTTCTCGGCGAAGATGAGACGCTGCT-GTCCGGTGGGATGCTCTCCTTGTCC-TG 2470 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| || | || | | | || ||| || || ||||| | || || || || Sbjct 2469 AATTTTGGCCTTGACATTGTCAATGGTATCGGAGGATTCGACCTCAAAGGTGATGGTCTT 2410 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || ||||| |||||||| || Sbjct 2409 TCCCATGAGGGTTTTCACGAAGATCTGCATTTT 2377 >seq25273 Length=6599 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGC-GCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||||| || || ||||| | || || | ||| ||| ||||||||||| |||| ||| Sbjct 376 TCCTTCTGGATATTGTAGTCAGGTAGTGTTCTGCT-GTCTTCGAGCTGCTTCCCGGAGAA 318 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || || || ||||||| || | || |||||| ||| ||| |||| || | || Sbjct 317 GATGAGACGTTGCTGGTCCGGTGGGATGCCCTCCTTCTCC-TGAATTTTGGCCTTGACAT 259 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | || ||| || || ||||| | || || || || ||||| || || || | Sbjct 258 TGTCAATGGTATCGAAGGATTCGACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTTTTCA 199 Query 41850 CGAAAATCTGCATGTT 41865 |||| |||||||| || Sbjct 198 CGAAGATCTGCATTTT 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461845729602400