Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq339 113 1e-19 seq4985 98.7 2e-15 seq1118 98.7 2e-15 seq799 98.7 2e-15 seq667 98.7 2e-15 >seq339 Length=880584 Score = 113 bits (124), Expect = 1e-19 Identities = 301/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||| | ||||||||| | || || ||||| || | || |||||||| ||| Sbjct 293293 TTCGCCGAGAGGATCGTCGCCTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTC 293234 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||| |||| ||||||||| ||| ||| | ||||| || ||| | || |||||| Sbjct 293233 TGCTCCATATTTTGGCTGAAGAAGCGGGGTCTCATGCCAGGACTCACCTTCTCCAACGAG 293174 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGC-TTATGTATTCAAAGCT 230351 || | || ||||| ||| | || | | || ||| || |||| || || | | Sbjct 293173 TTGGTGTCACGTGACGAAGGTTTGCA-CTGCGATTTTGCGTGCCTTATATACTCTCTGTT 293115 Query 230352 CCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGA 230411 || |||||| ||| || | || | | || || || || | || Sbjct 293114 GAGGAGCAAGCTGAGCGAGGAGCGCGTGAGGGGTATAGTGAAGGAGGCGGTGGAGATTGA 293055 Query 230412 AAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTT- 230469 || |||||| | |||||||| | || ||||| ||| |||| ||||| || || | Sbjct 293054 AAGGGAGTTTGTCTGTGACGCGCTGCCG-GTCGCTTTAGTTGGGATGAAT--TGTACGTT 292998 Query 230470 -ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 |||| ||||||||||| || || || || | | || ||||| | || |||||||| Sbjct 292997 GATGGCCCAGTACATCGAGTTTGTTGCGGATAGGCTGTTGGTTGCGTTAGGGTACGAGAA 292938 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||| | || || |||| | ||||||||||| || | ||||||||||| Sbjct 292937 GGTGTACGGTGTGACAAATCCGTTTGATTGGATGGAGCTCATCTCCTTGCAAGGGAAGAC 292878 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 ||||||||| || ||| | || | || ||||| Sbjct 292877 CAACTTCTTTGAGAAGAGGGTTGGAGAATATCA 292845 >seq4985 Length=111636 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 92043 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 91984 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 91983 CCCACGGTGGGC 91972 >seq1118 Length=308725 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 179216 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 179275 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 179276 CCCACGGTGGGC 179287 >seq799 Length=334184 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 75065 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 75006 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 75005 CCCACGGTGGGC 74994 >seq667 Length=428800 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 179373 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 179314 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 179313 CCCACGGTGGGC 179302 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||| |||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 178988 TGCCCGTCTAACTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 178929 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 178928 CCCCACGGTGGGC 178916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057602985195410