Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1128 122 7e-23 seq596 113 4e-20 seq347 109 5e-19 seq1118 105 6e-18 >seq1128 Length=278557 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | || |||||||| || ||||| ||||| || Sbjct 246813 CCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCA 246754 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| || || ||| | || || |||||||||||| || Sbjct 246753 AGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 246694 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| ||| || || | | ||| || || | | ||| Sbjct 246693 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 246634 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| ||||||||||| | || |||||||| || ||||| Sbjct 246633 TCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Score = 111 bits (122), Expect = 1e-19 Identities = 149/206 (72%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| ||||| || ||||| || ||||||| ||||| || || Sbjct 246327 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 246268 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| || | ||||||||||| |||||| || Sbjct 246267 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTA 246208 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | | |||| || | ||| |||||||||||||| || || Sbjct 246207 ACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 246148 Query 21159 TTGACAAATATTTGCAT-TTTGAATC 21183 || || || || ||||| | |||||| Sbjct 246147 TTCACGAAGATCTGCATCTGTGAATC 246122 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || |||||||| || || || || | ||||||| ||||| || || Sbjct 246555 GTTGATTCCTTCTGGATGTTATAATCGGCGAGAGTACGACCGTCCTCGAGCTGCTTTCCG 246496 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || ||||||||||| ||| || | |||||||||||| |||||| || Sbjct 246495 GCGAAGATGAGTCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 246436 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | | ||| || | ||| |||||||||||||| | || Sbjct 246435 ACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 246376 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 246375 TTGACGAAGATCTGCAT 246359 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| |||||||| || || || ||||| | ||||||| ||| || || Sbjct 247011 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCA 246952 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||||||| || | ||||||||||| ||||| ||| Sbjct 246951 GCAAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTC 246892 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || || || |||| |||| ||| ||||||||||| || | || Sbjct 246891 ACGTTATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCTGTGAGGGTC 246832 Query 21159 TTGACAAATATTTGCAT 21175 || || ||||| ||||| Sbjct 246831 TTCACGAATATCTGCAT 246815 >seq596 Length=631412 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||| || ||| | ||||| ||| | || |||||||| || ||||| ||||| || Sbjct 343402 TCCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 343343 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || |||| || |||||||| || || | || || | ||||||||| || Sbjct 343342 CAAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGG 343283 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||||||| ||||||| |||||| | | | | || || || |||| Sbjct 343282 GATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCAC 343223 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| ||| || ||||| || |||| ||||| || || || |||||| || Sbjct 343222 CTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTGTG 343171 >seq347 Length=438793 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| | ||| | || || | ||||||||||| |||||||| || || |||||||| Sbjct 270365 CCCCCCCTCAGACGAAGAACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCGCA 270424 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || || |||||||| || ||| |||| | ||||||||||| || Sbjct 270425 AGGGTACGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAGGG 270484 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | | |||||| || | Sbjct 270485 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACT 270544 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || || |||||||| || | || || ||||| ||||||||| Sbjct 270545 TCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATTTGCATT 270592 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||| || ||||| ||||| ||||| || Sbjct 270137 CCACCGCGGAGACGGAGCACCAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCA 270196 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||||||||| ||| | ||||| ||||||||||| || Sbjct 270197 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 270256 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| || || | | || || ||| || Sbjct 270257 ATACCTTCCTTGTCTTGGATCTTTGCCTTAACATTATCAACCGTGTCAGAACTTTCAACC 270316 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 270317 TCTAAAGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 270363 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||||||||| || ||||||||||| || || || || | || Sbjct 270835 GAGAACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATC 270894 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| |||||||| || ||| | ||||| || ||||| || || | || ||||| || Sbjct 270895 CTCAAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGGATCCCCTCCTTATC 270954 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | | || || ||| | || || | ||| ||||| Sbjct 270955 CTGGATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACCTCAAGGGTGATGGT 271014 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | ||||| ||||| || ||||| Sbjct 271015 CTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | |||| || |||| || | |||||||||||||| |||||||| || | Sbjct 270591 TTCCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAG 270650 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || || |||| || || || || || || | || | || |||||||| | Sbjct 270651 CAAGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAG 270710 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||||| || || | | ||| || ||| | ||| Sbjct 270711 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAA 270770 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| ||||| || | ||||| ||||| || ||||| Sbjct 270771 CCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 >seq1118 Length=308725 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||||||||| |||||||| || || ||||| || || || || | || Sbjct 111111 AGAACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCAAGAGTGCGGCCATCT 111170 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| |||| | ||||||||||| || | ||||||||||| Sbjct 111171 TCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCC 111230 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | |||||| || |||| || || ||| Sbjct 111231 TGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACCTCCAAAGTGATAGTC 111290 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||||||| | || || ||||||||||||||| Sbjct 111291 TTGCCGGTAAGAGTCTTCACAAATATTTGCATT 111323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||| |||||||| ||||||||||| ||||| || | | || Sbjct 111794 GAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCCATC 111853 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||| |||||||| || ||| | || || || |||||||| || | || |||||||| Sbjct 111854 CTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTC 111913 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | | | || ||| | || || | ||| ||||| Sbjct 111914 CTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACCTCAAGGGTGATGGT 111973 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || | ||||| ||||| || ||||| Sbjct 111974 CTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | ||||| || || || ||||| ||||| || Sbjct 110868 CCACCGCGGAGACGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCA 110927 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||||||||| ||| ||||||| ||||| ||||| ||| Sbjct 110928 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGG 110987 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | |||||| || Sbjct 110988 ATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATCGTATCAGAACTTTCAACC 111047 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || || ||||| || | ||||| ||||| |||||||| Sbjct 111048 TCTAAAGTGATTGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 111094 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| ||||||||||| || ||||||||||| || || || || | || Sbjct 111566 GAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATC 111625 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || || || || || || | || || || |||||||| || | || |||||||| Sbjct 111626 TTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTC 111685 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | ||| || ||| | || || | || ||||| Sbjct 111686 CTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCTTTCAACCTCAAGCGTGATGGT 111745 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | ||||| ||||| || ||||| Sbjct 111746 CTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422175279546812