Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq339 336 2e-87 seq596 154 2e-32 seq181 150 2e-31 seq1128 141 1e-28 seq1118 118 1e-21 seq347 118 1e-21 >seq339 Length=880584 Score = 336 bits (372), Expect = 2e-87 Identities = 555/792 (70%), Gaps = 9/792 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTG-ATTTTCCCCATACAATACCCGGA 116634 |||||||| || ||| || ||| | | ||| || || |||||||| || |||||||| Sbjct 293743 GAGCCGCTTCT-CGCCCCAAACCCGGACCGTTTCTGCATGTTCCCCATCCAGTACCCGGA 293685 Query 116635 CATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 || ||| |||||||| ||||||||||| || |||||||||| ||||||||| || || Sbjct 293684 AATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGATCT 293625 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||| ||||||| || ||||||| ||| | | | ||||| ||| |||||| || Sbjct 293624 CTCCCAGGACACCCGCCACTGGGAAGCCTTAACCCCCGACGAGACCCACTTCATCTCTCA 293565 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 | | || ||||| ||||||||| ||||||||||||| |||||| || | || ||||| Sbjct 293564 CATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGCCGTTT 293505 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | ||| | ||||| |||||||| || |||||||||||| |||||||| || || Sbjct 293504 CATGACCGAGATCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCAATCGA 293445 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||| | ||||| || ||||| ||| |||| || ||| | || |||| Sbjct 293444 GAACATCCACTCCGAGATGTACAGTCTCCTGCTCGAGACCTACATCAAGGACTCAGAGGT 293385 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| ||| | || |||||||||||||| |||||||||| |||||| || || Sbjct 293384 CAAGCACCGCCTCTTCCACGCCATCGAGACGGTGCCGTGCGTGGCCAGGAAGGCGGATTG 293325 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||| | |||||| | || ||| |||||| |||| | | || ||||| || Sbjct 293324 GGCCATCAAGTGGATCAACAGCTCCGAG---ACCTTCGCCGAGAGGATCGTCGCCTTTGC 293268 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 ||| || || ||||||| || || || ||| | ||||||||||||| ||||| || Sbjct 293267 TTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCTCCATATTTTGGCTGAAGAAGCG 293208 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 || |||||||| || || || ||| ||||||| | | || | ||||| ||| |||| Sbjct 293207 GGGTCTCATGCCAGGACTCACCTTCTCCAACGAGTTGGTGTCACGTGACGAAGGTTTGCA 293148 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGA-CCGAGCGCGGCGCGCG 117233 ||||| ||||| || | | | | | | | | | ||| | | ||||| || ||||| Sbjct 293147 CTGCGATTTTGCGTGCCTTATATACTCTC-TGTTGAGGAGCAAGCTGAGCGAGGAGCGCG 293089 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGC 117293 | |||| || || | || ||||| | || || | || || || ||||||| Sbjct 293088 TGAGGGGTATAGTGAAGGAGGCGGTGGAGATTGAAAGGGAGTTTGTCTGTGACGCGCTGC 293029 Query 117294 CGGT-GCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCC 117352 |||| || | | ||||| | ||||| |||| | || ||||||||||| || || Sbjct 293028 CGGTCGCTTTAGTTGGGA-TGAATTGTACGTTGATGGCCCAGTACATCGAGTTTGTTGCG 292970 Query 117353 GACAGGCTGCTG 117364 || |||||| || Sbjct 292969 GATAGGCTGTTG 292958 >seq596 Length=631412 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| || ||||| || || |||||| | || || || || | Sbjct 343174 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTCCTC 343233 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| | || | ||| || | ||||| || |||||||| |||||| Sbjct 343234 GGACACCATTGACAACG-TGAAAGCAAAGATCCAAGACAAGGAAGGCATCCCGCCGGACC 343292 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| ||||||| ||| || |||||||| || |||| | || | |||||||| Sbjct 343293 AGCAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGTAGGACTTTGGCCGACTACA 343352 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| | ||||| ||||| |||||| | ||||| || || Sbjct 343353 ACATCCAGAAGGAGTCGACGCTCCATCTGGTGTTGAGGTTGAGAGGAGG 343401 >seq181 Length=541317 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || ||||| || || || ||| | || |||||| || | Sbjct 240654 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCCTCA 240713 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| |||||| | ||||| || |||||||| | ||||| Sbjct 240714 GATACCATCGACAACG-TGAAGGCAAAAATCCAAGACAAGGAAGGCATCCCACCAGACCA 240772 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||| || ||||| || || |||| || || ||| ||||||||| Sbjct 240773 ACAACGCCTCATCTTCGCTGGAAAACAACTTGAAGACGGCCGGACTCTCGCCGACTACAA 240832 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| | ||||| || || ||| | ||| | | ||||||| Sbjct 240833 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTCCGCGGCGGCG 240882 >seq1128 Length=278557 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| || || || | Sbjct 246131 ATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTGGAGAGCAGC 246190 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || ||||| ||||||| Sbjct 246191 GACACCATCGACAACGTT-AAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGACCA 246249 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| ||||||||| ||||||||| Sbjct 246250 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 246309 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 246310 CATCCAGAAGGAGTCCACACTCCACCTCGT 246339 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| || || ||| | || || || || | Sbjct 246587 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACGATTACCCTGGAGGTTGAGAGCAGC 246646 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| |||||| | ||||| || || ||||| ||||||| Sbjct 246647 GACACCATCGACAACG-TCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCGGACCA 246705 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| || || || ||||| || |||| ||||||||| |||||||| Sbjct 246706 GCAGAGGCTCATCTTTGCAGGGAAGCAGCTAGAGGACGGGCGCACCCTTGCAGACTACAA 246765 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || ||| |||| Sbjct 246766 CATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCG 246801 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| || | Sbjct 246359 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAGC 246418 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || |||||||| |||| || Sbjct 246419 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGATCA 246477 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| ||| || || ||||| || |||| || || ||| ||| || || Sbjct 246478 GCAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTCGCCGATTATAA 246537 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 246538 CATCCAGAAGGAATCAACCCTCCACCTGGT 246567 >seq1118 Length=308725 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| ||||| ||||| |||||||| | || || ||| | | Sbjct 111778 ATGCAGATCTTTGTAAAAACTCTCACTGGCAAGACCATCACGCTTGAGGTTGAAAGCTCT 111719 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||| ||||| | |||||| Sbjct 111718 GACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAG 111659 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| ||| || || || || || || | ||||| || ||||| ||| Sbjct 111658 CAAAGGCTGATCTTCGCTGGTAAGCAACTTGAAGATGGCCGCACTCTTGCTGACTATAAC 111599 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| | || | || || ||||| ||| Sbjct 111598 ATCCAGAAGGAGTCCACACTGCACTTGGTTCTCCGTTTAAGGGGTGGC 111551 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| |||||||| ||||| | || || ||| | Sbjct 111094 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAAACAATCACTTTAGAGGTTGAAAGTTCT 111035 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | | |||| ||| |||| ||||| ||||| |||||| | ||||| Sbjct 111034 GATACGATTGATAATG-TGAAGGCAAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCA 110976 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || || | || ||||||||||| || || | ||||| || ||||||||| Sbjct 110975 ACAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCCGACTACAA 110916 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||| || |||| || || || ||| Sbjct 110915 CATCCAGAAAGAATCCACCCTTCACCTCGTG 110885 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||||||||| || |||| || || | | Sbjct 111550 ATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATAACTCTCGAGGTTGAGAGCTCT 111491 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || |||||||| | ||||| Sbjct 111490 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 111431 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| ||| || ||||| || || || | ||||| || || || ||| Sbjct 111430 CAAAGGCTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACTCTTGCTGATTATAAC 111371 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || || |||||| |||| || || Sbjct 111370 ATTCAAAAGGAGTCCACCCTCCA 111348 >seq347 Length=438793 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| ||||| ||||| ||||||||| | || |||||| | | Sbjct 271047 ATGCAGATCTTTGTAAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCT 270988 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| || | | |||||| || || | || || ||||| ||||| | || ||| Sbjct 270987 GACACAGTTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGGATCCCACCAGATCAG 270928 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || || |||||||| || || | ||||| || ||||| ||| Sbjct 270927 CAAAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGCCGCACTCTTGCTGACTATAAC 270868 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 270867 ATCCAGAAGGAGTCCACACTCCA 270845 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| ||||| |||||||||||||| |||| || || | | Sbjct 270819 ATGCAGATCTTTGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCT 270760 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| || |||||||| | |||||| Sbjct 270759 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 270700 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | |||| ||| || || || || || |||| ||||| || || || ||| Sbjct 270699 CAAAGGTTGATCTTCGCCGGTAAGCAACTTGAAGACGGCCGCACTCTTGCTGATTATAAC 270640 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| |||||| |||| || || | || |||| | ||||| || Sbjct 270639 ATCCAAAAGGAGTCCACCCTCCACTTGGTCCTGCGGCTCAGGGGTGG 270593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || ||||| || ||||| | || || ||| | Sbjct 270363 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACTTTAGAGGTTGAAAGTTCT 270304 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| || | | | |||| ||| || | ||||| || || ||||| | |||||| Sbjct 270303 GACACGGTTGATAATGTTAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 270244 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||||||||| || || | ||||| || ||||||||| Sbjct 270243 CAGAGGCTTATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCTGACTACAAC 270184 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| || || |||| || || || ||| Sbjct 270183 ATCCAAAAAGAATCCACCCTTCACCTGGTG 270154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515114179006320