Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1118 132 7e-26 seq347 113 7e-20 >seq1118 Length=308725 Score = 132 bits (146), Expect = 7e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | ||||| || || ||||| ||||| ||| | ||| ||||| Sbjct 111323 AATGCAAATATTTGTGAAGACTCTTACCGGCAAGACTATCACTTTGGAGGTTGAAAGTTC 111264 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || || || || || || ||||| || ||||| || || Sbjct 111263 TGATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 111204 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | ||||||||||| ||||| | || ||| | || || | | ||| || || Sbjct 111203 GCAGAGGTTGATTTTTGCAGGTAAACAGCTTGAAGATGGCCGCACTCTTGCAGACTACAA 111144 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||| |||||||| |||||| | ||| | | ||||| || Sbjct 111143 TATCCAAAAGGAATCCACTTTGCACTTGGTTCTTCGTCTTAGGGGTGGCAT 111093 Score = 123 bits (136), Expect = 4e-23 Identities = 192/271 (71%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || |||||||| || ||| ||||| ||||| | Sbjct 111094 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAAACAATCACTTTAGAGGTTGAAAGTTCT 111035 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | || || |||||||| || || ||||| || || || ||| Sbjct 111034 GATACGATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCAA 110975 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||||||||||||||| ||||| | || ||| | || || | | || || || Sbjct 110974 CAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCCGACTACAAC 110915 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAA--ATT 124776 || || |||||||| || | || | || | ||| | || |||||||| | | || Sbjct 110914 ATCCAGAAAGAATCCACCCTTCACCTCGTGCTCCGTCTCCGCGGTGGTATGCAGATTTTT 110855 Query 124777 CATAAAA-ATTGATTGTAAATAAATATCACT 124806 ||||| |||| || ||| || ||||||| Sbjct 110854 GTTAAAACTTTGACTGGAAA-AACTATCACT 110825 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || || || |||||||| |||||| | ||| |||| ||| Sbjct 111550 ATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATAACTCTCGAGGTTGAGAGCTC- 111492 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || || || || ||||| || || || || || Sbjct 111491 TGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 111432 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||| || || || || |||||| | || ||| | || || | | |||||||| Sbjct 111431 ACAAAGGCTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACTCTTGCTGATTATAA 111372 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 |||||||| || || || | || ||||| |||| Sbjct 111371 CATTCAAAAGGAGTCCACCCTCCACTTGGTCCTACG 111336 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || || |||||||| ||| | ||| |||| Sbjct 110866 ATGCAGATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTCTTGAGGTTGAGAGTTCG 110807 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| |||| || || ||||| || || ||||| || ||||| || || Sbjct 110806 GACACCATTGATAATGTTAAGTCA-AAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 110748 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || || || | |||||| | || || | | ||||||||| Sbjct 110747 GCAGAGGTTGATCTTTGCGGGGAAGCAGCTGGAGGATGGGCGTACTCTTGCAGATTATAA 110688 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || || || || ||| ||||| | ||| | || | || |||||| Sbjct 110687 TATCCAGAAGGAGTCTACTCTGCATCTTGTTCTTCGCCTGCGTGGTGGT 110639 >seq347 Length=438793 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || ||||| || || ||| ||||| ||||| | Sbjct 270363 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACTTTAGAGGTTGAAAGTTCT 270304 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| |||| || || || ||||| || |||||||| || || || || Sbjct 270303 GACACGGTTGATAATGTTAAGGCA-AAGATCCAAGACAAGGAAGGTATCCCTCCAGACCA 270245 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| ||||| | || ||| | || || | | || || || Sbjct 270244 GCAGAGGCTTATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCTGACTACAA 270185 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || |||| | ||| | || |||||||| Sbjct 270184 CATCCAAAAAGAATCCACCCTTCACCTGGTGCTCCGTCTCCGCGGTGGTAT 270134 Score = 107 bits (118), Expect = 3e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || ||||| ||||| ||| | || ||||| Sbjct 270592 AATGCAAATCTTTGTGAAGACTCTTACTGGCAAGACTATCACTTTGGAAGTTGAAAGTTC 270533 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | || || || || || || ||||| || || || || || Sbjct 270532 TGATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCA 270473 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | ||||||||||| ||||| | || ||| | || || | | || || || Sbjct 270472 GCAGAGGTTGATTTTTGCAGGTAAACAGCTTGAAGATGGCCGTACCCTTGCGGACTACAA 270413 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 ||| ||||| ||||| |||||||| || ||| | ||| Sbjct 270412 TATCCAAAAGGAATCCACTTTGCACTTAGTTCTTCGT 270376 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | || || ||||| || || | ||| |||| Sbjct 270135 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAGAGTTCG 270076 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| ||||| || ||||| || || ||||| || |||| ||||| Sbjct 270075 GACACCATTGAAAATGTAAAAGCAAAGATTCAGGACAAGGAAGGGATTCCACTAGATCAG 270016 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || |||||||| || || | |||||| | || || | | |||||||||| Sbjct 270015 CAGAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGCACTCTTGCAGATTATAAT 269956 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| || || || ||| ||||| | ||| | || | || |||||| Sbjct 269955 ATTCAGAAGGAGTCTACTCTGCATCTTGTTCTTCGCCTGCGTGGTGGT 269908 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || || || ||||| || || || | ||| | ||| | Sbjct 271047 ATGCAGATCTTTGTAAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCT 270988 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||| || ||| | || || || || ||||| || || || ||||| ||||| Sbjct 270987 GACACAGTTGACAATGTCAAGGCCAAGATCCAGGATAAGGAGGGGATCCCACCAGATCAG 270928 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || ||||| | |||||| | || || | | || ||||| Sbjct 270927 CAAAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGCCGCACTCTTGCTGACTATAAC 270868 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || |||||| | ||| | | ||||| || Sbjct 270867 ATCCAGAAGGAGTCCACACTCCACTTGGTTCTCCGTCTCAGGGGTGGCAT 270818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755302009737600