Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1128 147 2e-30 seq596 140 3e-28 seq1118 136 3e-27 seq347 131 1e-25 seq181 116 3e-21 >seq1128 Length=278557 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| ||||| || || |||||||| ||| | ||||| ||||||||||| Sbjct 246334 GTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 246275 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| ||| |||||||||||||||| || ||||| || || |||||||| || || Sbjct 246274 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTT 246215 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | |||| |||||| ||||||| ||||||| ||| | || |||||||| Sbjct 246214 GGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGT 246155 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || ||| || || || |||||||| Sbjct 246154 CAAAGTCTTCACGAAGATCTGCAT 246131 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || || || || || ||||| |||||| | ||| || |||||| Sbjct 246567 ACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCGGCGAGAGTACGACCGTCCTCG 246508 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| ||||||| | ||||||||| || || ||||| |||||||| Sbjct 246507 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGG 246448 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| ||||||||||||||| ||| | || ||| Sbjct 246447 ATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTG 246388 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || ||||||||| Sbjct 246387 CCGGTGAGGGTCTTGACGAAGATCTGCATG 246358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || |||||||||||||| | || | |||||| | ||| || ||| Sbjct 247011 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCA 246952 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || ||||| || || |||||||| ||| || || Sbjct 246951 GCAAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTC 246892 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||||| | ||| ||||| | ||| | || ||||| || || || Sbjct 246891 ACGTTATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCTGTGAGGGTC 246832 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 246831 TTCACGAATATCTGCAT 246815 >seq596 Length=631412 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | || |||||||||| |||| || ||||| || || |||||||| ||| | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | || |||||||||||||| ||| ||||||| || ||||| || || || Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||||||| || ||| ||| || | || | |||||||| | ||| ||| Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACC 343222 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||| || || || || ||||| || || |||||||| Sbjct 343221 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq1118 Length=308725 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||||||||| ||||| | |||||| ||| || Sbjct 111342 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCA 111401 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| |||||| |||| || | || || || ||||| ||||| |||||||| Sbjct 111402 AGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 111461 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | |||||| ||||||| || | |||||| Sbjct 111462 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATGGTTTTG 111521 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||||||||| Sbjct 111522 CCAGTGAGGGTTTTCACAAAAATCTGCATG 111551 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| || || ||||| ||||| || || || |||||| |||||| Sbjct 111798 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCCATCCTCA 111857 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| || | ||||| || || || || ||||||||||| Sbjct 111858 AGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGG 111917 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||| |||||||| | ||| | || || Sbjct 111918 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTTT 111977 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||||||||| |||||||| Sbjct 111978 CCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || || || ||||| | ||| ||| |||||| ||||| || || Sbjct 110670 GTAGACTCCTTCTGGATATTATAATCTGCAAGAGTACGCCCATCCTCCAGCTGCTTCCCC 110729 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || || || |||||||| ||| ||| ||| Sbjct 110730 GCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTTGACTTA 110789 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||||| ||||| ||||| | || | ||||| || |||| |||| Sbjct 110790 ACATTATCAATGGTGTCCGAACTCTCAACCTCAAGAGTGATAGTTTTTCCAGTCAAAGTT 110849 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 110850 TTAACAAAAATCTGCAT 110866 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| ||||| || || ||||| || || | |||||| ||| || Sbjct 111570 ACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCTTCA 111629 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || |||||| |||| || | ||||| || || || || ||||||||||| Sbjct 111630 AGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGG 111689 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| || ||||| | || | || ||| Sbjct 111690 ATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCTTTCAACCTCAAGCGTGATGGTCTTG 111749 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||||||||| |||||||| Sbjct 111750 CCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||| | ||| | || || ||||| || |||||||| ||| Sbjct 110866 TACCACCGCGGAGACGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 110925 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||| || |||||||| || || | || || | ||| || || || | Sbjct 110926 CAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGG 110985 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| ||| ||| || || | || | || || | || || | Sbjct 110986 GGATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATCGTATCAGAACTTTCAA 111045 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | |||||||| || || ||||| ||||| || |||||| Sbjct 111046 CCTCTAAAGTGATTGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCATG 111095 >seq347 Length=438793 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || ||||| || ||||| | ||||||| |||||| ||||| || || Sbjct 269939 GTAGACTCCTTCTGAATATTATAATCTGCAAGAGTGCGCCCATCCTCCAGCTGCTTCCCT 269998 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| | || || || |||||||| ||| ||| ||| Sbjct 269999 GCAAAGATCAACCTCTGCTGATCTAGTGGAATCCCTTCCTTGTCCTGAATCTTTGCTTTT 270058 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||||| ||||| ||||| | ||| | ||||| || |||| |||| Sbjct 270059 ACATTTTCAATGGTGTCCGAACTCTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTT 270118 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 270119 TTGACAAAAATCTGCAT 270135 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| ||||| || || ||||| || || | |||||| |||||| Sbjct 270839 ACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTCA 270898 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| ||||| |||| || | |||||||| || || || |||||||| || Sbjct 270899 AGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGGATCCCCTCCTTATCCTGG 270958 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || || ||||| | ||| |||||||| | ||| | || ||| Sbjct 270959 ATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTTG 271018 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||||||||| |||||||| Sbjct 271019 CCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| ||||| ||||| | |||||| || || Sbjct 270611 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCGTCTTCA 270670 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| | | ||||| || ||||| ||||| |||||||| Sbjct 270671 AGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 270730 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | |||||| ||||||| || | |||||| Sbjct 270731 ATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTTTTG 270790 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||||||||| ||||||||| Sbjct 270791 CCAGTGAGGGTTTTTACAAAGATCTGCATG 270820 >seq181 Length=541317 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||| | ||| || || || Sbjct 240863 CACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCTTC 240804 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || |||||||||||| ||||||| || || || || || || ||||| ||||||||| Sbjct 240803 AAGTTGTTTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTG 240744 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || | |||| ||| || | | |||||||| | ||| | ||| || Sbjct 240743 GATTTTTGCCTTCACGTTGTCGATGGTATCTGAGGATTCGACCTCTAGGGTTATCGTCTT 240684 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || ||||| || || |||||||||| Sbjct 240683 CCCCGTTAGGGTTTTCACGAAGATCTGCATGG 240652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433744179868444