Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1128 114 1e-20 seq1118 114 1e-20 seq347 111 2e-19 >seq1128 Length=278557 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| || | ||| |||||| || || ||||| || || || || ||| | Sbjct 246802 ACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCC 246743 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| ||||||||||| || || || ||||| | ||||||||| | || | | ||||| Sbjct 246742 GTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTT 246683 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||||||| |||| ||| | | | |||||||| || || || | || | Sbjct 246682 GTCCTGGATTTTTGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCAACCTCCAGGGTAA 246624 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| || || ||||| |||||||| ||||| Sbjct 246623 TCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Score = 104 bits (114), Expect = 3e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045 |||| |||||| || || ||||| || || || || || |||| || |||||||| || Sbjct 246328 TGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 246269 Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 43105 ||||| ||||| ||||||||||| | || | | ||||||||| || | || | | Sbjct 246268 GGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCC-TGGATCTTGGCCT 246210 Query 43106 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164 | ||| | | | |||||||| ||||| |||| |||||||| ||||| || | | Sbjct 246209 TAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAAG 246150 Query 43165 TCTTTACAAAGATTTGCAT 43183 |||| || ||||| ||||| Sbjct 246149 TCTTCACGAAGATCTGCAT 246131 >seq1118 Length=308725 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || |||||||| | ||||| |||| |||| |||||| || || || || ||||| Sbjct 111552 CCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 111611 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || || |||||||||||||| || || | |||||||| | || Sbjct 111612 AGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGG 111671 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||||||| ||| || || | | | | ||||| ||| ||| Sbjct 111672 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCT---TTCA 111728 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||| ||||| || || || ||||||||||| ||||| Sbjct 111729 ACCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | ||||| || | |||| |||||||| || || || |||||| Sbjct 111780 CCACCCCTGAGACGGAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCC 111839 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| |||||||| || || || | |||||||| | || Sbjct 111840 AGAGTGCGTCCATCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 111899 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||||||| ||| || |||| | | | ||||| ||| ||| Sbjct 111900 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCT---TTCG 111956 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || || || ||||||||||| ||||| Sbjct 111957 ACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||||||||| || |||||||| ||||| || | || || Sbjct 111342 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCA 111401 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || ||||||||||| || || | || ||||| | || | || ||||||||| | Sbjct 111402 AGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 111461 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || |||| | | | ||||| |||| || || |||| || |||||| Sbjct 111462 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCAACCTCGAGAGTTATGGTT 111518 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || || ||||| || ||||| Sbjct 111519 TTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 >seq347 Length=438793 Score = 111 bits (122), Expect = 2e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || | |||| ||||| || | ||| ||||||||| || || |||||||| Sbjct 270592 TCCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGC 270651 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| || || |||||||| ||||| || | | |||||||| | || Sbjct 270652 AAGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGG 270711 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | || ||||||||| ||| || |||| | | | ||||| |||| || Sbjct 270712 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTC---TC 270768 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||||||||| || || || ||||||||||| ||||| Sbjct 270769 AACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | ||||| || | |||| |||||| || || || || ||||| Sbjct 270821 CCACCCCTGAGACGGAGAACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 270880 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| |||||||| || || || | ||||| || | || Sbjct 270881 AGAGTGCGGCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGG 270940 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||| ||| ||| || |||| | | || ||||| ||| ||| Sbjct 270941 ATCCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCT---TTCG 270997 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| ||||| || || || ||||||||||| ||||| Sbjct 270998 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571701042129960