Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq335 107 3e-18 seq4739 93.3 6e-14 seq1118 89.7 8e-13 >seq335 Length=478728 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || |||| || | || || || || ||||| || || Sbjct 394875 GTTCCTCCCCTAAGCCTCAACACCAGGTGAAGTGTCGACTCCTTTTGGATATTGTAGTCA 394816 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| || ||| || |||||||||||||||||||||||||| |||||||| ||| Sbjct 394815 GCAAGGGTTCGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGCTGATCAGGA 394756 Query 146168 GGAATTCCTTCTTTATC 146184 || || |||||||| || Sbjct 394755 GGGATACCTTCTTTGTC 394739 >seq4739 Length=93234 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||||||||| | |||||||| | || || ||||| ||||| || |||| Sbjct 55010 TTCCACCTCTAAGTCGAAGGACCAAATGGAGGGTGGACTCTTTCTGGATATTGTAGTCTG 54951 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| || ||| | | |||||| | |||||| || | || |||||||| |||| Sbjct 54950 CCAGAGTTCGGCCATCCTTAAGTTGTTTGCTAGCAAAGATGAGCCTCTGCTGATCTGGAG 54891 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||| || ||||| Sbjct 54890 GGATCCCTTCCTTGTCTTG 54872 >seq1118 Length=308725 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| ||||| | | ||||| || ||||| ||||| || ||||| || |||| | Sbjct 111096 CCACCCCTAAGACGAAGAACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCA 111155 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| || | ||||| || ||||||||||| || ||||| || || || Sbjct 111156 AGAGTGCGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGG 111215 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || || || Sbjct 111216 ATTCCTTCCTTGTCCTG 111232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743374841437440