Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1118 125 5e-24 seq1128 107 1e-18 seq347 96.9 2e-15 seq596 95.1 8e-15 seq181 95.1 8e-15 >seq1118 Length=308725 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| | || ||||||||| ||||||||||||| Sbjct 110868 CCACCGCGGAGACGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCA 110927 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| |||||||| ||||| |||| ||| ||||| ||| Sbjct 110928 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGG 110987 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||| | || | |||| ||| | ||| || Sbjct 110988 ATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATCGTATCAGAACTTTCAACC 111047 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| |||||||| ||||| |||||||||||||| ||||| Sbjct 111048 TCTAAAGTGATTGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 111094 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| ||||| | || ||| | || || | ||||| || ||||| Sbjct 111588 TCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAG 111647 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||||| || | | ||||||||| ||||| ||| | || | Sbjct 111648 ATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG 111707 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| || || | ||||||||| ||||| ||||||||||| ||| Sbjct 111708 TCGATGGTGTCAGAGCTTTCAACCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACA 111767 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 111768 AAGATCTGCATC 111779 >seq1128 Length=278557 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| || ||||| ||||||||||| | Sbjct 246813 CCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCA 246754 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || || |||| || | |||||| ||||| || ||||||| |||||||| || ||| Sbjct 246753 AGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 246694 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || ||| ||| | | | | || | ||| | || || Sbjct 246693 ATCCCT-TCCTTGTCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAAC 246635 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || ||||||||||| || || |||||||||||||| Sbjct 246634 CTCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || || ||||| ||||||||||||| Sbjct 246357 CCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 246298 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || ||| |||| || | |||||| || ||||| ||||| |||||||||| || ||| Sbjct 246297 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 246238 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | | | | || | ||| | || || Sbjct 246237 ATCCCT-TCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCAC 246179 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| |||||||| | ||| ||||| |||||||||||| Sbjct 246178 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCATC 246130 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || ||| ||||| ||||| || |||| || ||| |||| Sbjct 246570 AGAACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCGGCGAGAGTACGACCGTCC 246511 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| | |||||| || || | || |||||||| Sbjct 246510 TCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCC 246451 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||||| || | |||||||| Sbjct 246450 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTC 246391 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||||||||| Sbjct 246390 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 246359 >seq347 Length=438793 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||||||| | || |||||| || ||||||||||| | Sbjct 270137 CCACCGCGGAGACGGAGCACCAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCA 270196 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280 || ||| | || || | ||| |||||||| || || |||| ||||||||| || || Sbjct 270197 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 270256 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 || || |||||||| |||||| ||| | || | | || || | ||| | Sbjct 270257 ATAC-CT-TCCTTGTCTTGGATCTTTGCCTTAACATTATCAACCGTGTCAGAACTTTCAA 270314 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| || ||||| || || |||||||||||||| ||||| Sbjct 270315 CCTCTAAAGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 270363 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || | ||| ||||| ||| || || || |||||||| | || |||| | || Sbjct 270380 AGAACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCGCAAGGGTACGGCCATCT 270439 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || ||||| ||||| | || |||||||||| || | | |||||||| Sbjct 270440 TCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCC 270499 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| | ||| || |||| ||||| || Sbjct 270500 TGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACTTCCAAAGTGATAGTC 270559 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| ||||||||||| ||||| Sbjct 270560 TTGCCAGTAAGAGTCTTCACAAAGATTTGCAT 270591 >seq596 Length=631412 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || ||||| |||||| || | || || ||||| ||||||||||||| Sbjct 343402 TCCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 343343 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || | |||| || | ||| || || ||||| ||||| || |||||||| | ||| Sbjct 343342 CAAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGG 343283 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCG 34339 | | || |||||||| |||||| ||||| | | | | || | || | || || Sbjct 343282 G-ATGCCTTCCTTGTCTTGGATCTTT-GCTTTCACGTTGTCAATGGTGTCCGAGGACTCC 343225 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||| || || || || || |||||||| ||||||||||| Sbjct 343224 ACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq181 Length=541317 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||||| ||||| | || || ||||| ||||||||||||| Sbjct 240880 CCGCCGCGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 240821 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | || || || ||||| ||||| || || ||||| || Sbjct 240820 AGAGTCCGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTGGG 240761 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| || ||| ||| | | | | || | ||| | |||||||| Sbjct 240760 ATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTGTCGATGGTATCTGAGGATTCGACC 240701 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || || |||||||| ||||||||||| Sbjct 240700 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 240654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323007792165920