Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1128 125 6e-24 seq596 120 2e-22 seq1118 98.7 8e-16 seq347 93.3 3e-14 >seq1128 Length=278557 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| |||| || || || Sbjct 246334 GTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 246275 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| || | ||||| ||||| ||||| | || ||||||||| || || Sbjct 246274 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTT 246215 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | | |||| | | ||||||||| | ||| || |||||||| || Sbjct 246214 GGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGT 246155 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||| ||||| ||||| Sbjct 246154 CAAAGTCTTCACGAAGATCTGCAT 246131 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| ||||||||||| || ||| |||| || Sbjct 246795 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCT 246736 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||| ||||| || || | || ||||||||| Sbjct 246735 AGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGG 246676 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| ||| || | | | |||| | | ||| ||||||| ||||||||||||| Sbjct 246675 ATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACCTCCAGGGTAATCGTCTTG 246616 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| |||||||| |||||| Sbjct 246615 CCGGTGAGGGTCTTGACAAAGATCTGCATG 246586 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || | | || |||| || || || || || Sbjct 247006 CTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAA 246947 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| ||||| | || ||||||||| ||| || ||| || Sbjct 246946 GATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTT 246887 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||||||||||| ||| || |||||||| || || |||||||| Sbjct 246886 ATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCTGTGAGGGTCTTCAC 246827 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 246826 GAATATCTGCAT 246815 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||||| ||||| || ||| || ||| |||| || Sbjct 246567 ACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCGGCGAGAGTACGACCGTCCTCG 246508 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | | ||| || || || || | || ||||||||| Sbjct 246507 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGG 246448 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | | ||| ||||| | ||| || |||||| Sbjct 246447 ATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTG 246388 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || ||||| |||||| Sbjct 246387 CCGGTGAGGGTCTTGACGAAGATCTGCATG 246358 >seq596 Length=631412 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| || || |||| || ||||| ||||||||| |||||||||||| | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | | |||| || || |||||||||||||| || | || || ||||| || || Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCAC 45288 | || |||||||| | | ||||||| || | | | | ||||| |||||| Sbjct 343281 ATGCCTTCCTTGTCTTGGA-TCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCAC 343223 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| |||||||| ||||| || || ||||| ||||| ||||| Sbjct 343222 CTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq1118 Length=308725 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| ||||| || || |||||||| || ||| | || || Sbjct 111114 ACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCAAGAGTGCGGCCATCTTCA 111173 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || ||||||| ||| |||||||| || | || ||||||||| Sbjct 111174 AGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGG 111233 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || || || ||||||| || || |||||| Sbjct 111234 ATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACCTCCAAAGTGATAGTCTTG 111293 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||||||||| |||||||| Sbjct 111294 CCGGTAAGAGTCTTCACAAATATTTGCAT 111322 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| || || | | ||||||||||| ||| ||||||||| ||||| ||||| Sbjct 111551 GCCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGC 111610 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || ||||| || || ||||| |||| || || ||||| || || Sbjct 111611 AAGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGG 111670 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | |||| | || || Sbjct 111671 GATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCTTTCAAC 111730 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || |||||||| || ||||| || |||||||| ||||| Sbjct 111731 CTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| || ||||| |||||||||||| || ||| | || || || || Sbjct 110891 GTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCTTCAAGCTG 110950 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || || || || | || ||||||||| || || | |||||||||||| ||| || Sbjct 110951 TTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTT 111010 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | || || || ||||| | || || || ||||| || Sbjct 111011 TGCCTTCACATTATCAATCGTATCAGAACTTTCAACCTCTAAAGTGATTGTTTTGCCAGT 111070 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||||||||||||| Sbjct 111071 GAGGGTTTTCACAAAGATTTGCATG 111095 >seq347 Length=438793 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || ||||||| ||| ||||| || || |||||||| || || | || || Sbjct 270383 ACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCGCAAGGGTACGGCCATCTTCA 270442 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || ||||||| ||| ||||||||||| | || ||||||||| Sbjct 270443 AGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGG 270502 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || || || || |||| || || |||||| Sbjct 270503 ATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACTTCCAAAGTGATAGTCTTG 270562 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||||||||||||||| Sbjct 270563 CCAGTAAGAGTCTTCACAAAGATTTGCAT 270591 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| || || || ||||||||||| || ||| | || || Sbjct 270155 ACCAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCA 270214 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || || | || ||| ||||| ||||| | ||| |||||||| Sbjct 270215 AGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 270274 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| |||||| | || |||| || || ||||| | || || |||||| Sbjct 270275 ATCTTTGCCTTAACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTG 270334 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || |||||||||||||||||| Sbjct 270335 CCAGTAAGGGTTTTCACAAAGATTTGCATG 270364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394996682137447