Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq347 86.0 5e-12 seq1118 82.4 6e-11 >seq347 Length=438793 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| ||||| || || || || ||||| ||||| || | || | ||| Sbjct 270836 AGAACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCC 270895 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| ||||||| ||||| ||||| || | || |||||||| Sbjct 270896 TCAAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGGATCCCCTCCTTATCC 270955 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | |||| |||||| | ||| |||| ||||||| | Sbjct 270956 TGGATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTC 271015 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||||||||||| || ||||| Sbjct 271016 TTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 >seq1118 Length=308725 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| |||| || |||| ||| || || || || ||||||||||| || || || Sbjct 111323 TCCACCCCTGAGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGC 111382 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| | |||||| || || |||| || |||||||| || || Sbjct 111383 AAGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGG 111442 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | |||||| | ||| |||||| | ||| Sbjct 111443 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAAC 111502 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| ||||||| || | ||||| |||||||| ||||| Sbjct 111503 CTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379268608580715