Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq339 226 3e-54 seq596 116 3e-21 seq1128 98.7 9e-16 seq1118 91.5 1e-13 seq347 91.5 1e-13 seq181 86.0 6e-12 >seq339 Length=880584 Score = 226 bits (250), Expect = 3e-54 Identities = 584/877 (67%), Gaps = 17/877 (2%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| || || | || || || || ||| | |||||||| ||||| || || || || Sbjct 293708 CATGTTCCCCATCCAGTACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTT 293649 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||||| ||| || || || || || |||| || | ||||| || | | Sbjct 293648 CTGGACCGCCGAGGAGGTCGATCTCTCCCAGGACACCCGCCACTGGGAAGCCTTAACCCC 293589 Query 57665 ATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGT 57724 |||| | || || ||| | | || || |||||||| ||||| || || || Sbjct 293588 CGACGAGACCCACTTCATCTCTCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGT 293529 Query 57725 TAACGAGAATTTGGTCGAAAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGC 57782 |||||| | | || | ||||| | || | || || | ||||| | | Sbjct 293528 CCTCGAGAACCTCGCCGGCCG--TTTCATGACCGAGATCCAGGTCGCCGAGGCCCGCGCC 293471 Query 57783 TTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATC 57842 || ||||| || || | || || || ||| | || || || ||||| || || || Sbjct 293470 TTCTACGGCTTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGCTC 293411 Query 57843 GATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATG 57902 || || ||| | |||||| || | || | | || ||| |||| ||||| || || Sbjct 293410 GAGACCTACATCAAGGACTCAGAGGTCAAGCACCGCCTCTTCCACGCCATCGAGACGGTG 293351 Query 57903 CCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 || ||| | |||| |||||| || ||| | ||||| ||||| || ||| || | || Sbjct 293350 CCGTGCG-TGGCCAGGAAGGCGGATTGGGCCATCAAGTGGATCAACAGCTCCGAGACC-- 293294 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 |||||||||||| | |||| || || ||| ||||| || ||||| || || ||||| Sbjct 293293 -TTCGCCGAGAGGATCGTCGCCTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTT 293235 Query 58022 -TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACG 58080 ||| || |||||||| ||||||| || || || ||||| || || || || ||||| Sbjct 293234 CTGCTCCA-TATTTTGGCTGAAGAAGCGGGGTCTCATGCCAGGACTCACCTTCTCCAACG 293176 Query 58081 AGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACA 58140 ||||| | || || ||||| ||| | || |||||||||||||| || ||||||| Sbjct 293175 AGTTGGTGTCACGTGACGAAGGTTTGCACTGCGATTTTGCGTGCCTTATATACTCTC-TG 293117 Query 58141 TTGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATC 58199 ||| | || | ||| ||| ||| | || || | | |||||||| | ||| Sbjct 293116 TTGAGGAGCAAGCTGAGCGAGGAGCGCGTGAGGGGTATAGTGAAGGAGGCGGTGGAGATT 293057 Query 58200 GAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTG 58259 |||| ||||||||| || || || ||||| || | | || ||||| | ||| Sbjct 293056 GAAAGGGAGTTTGTCTGTGACGCGCTGCCGGTCGCTTTAGTTGGGATGAATTGTACGTTG 292997 Query 58260 ATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT--CGAACTGATTGGAGAGC 58317 ||| | ||||||| ||||||||||| || || || ||| | || | | |||| Sbjct 292996 ATGGCCCAGTACATCGAGTTTGTTGCGGATAGGCTGTTGGTTGCGTTAGGGTACGAGAAG 292937 Query 58318 GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGA 58377 || ||| || |||||||||||||| ||| | || ||||| | | || |||| Sbjct 292936 GT--GTACGGTGTGACAAATCCGTTTGATTGGATGGAGCTCATCTCCTTGCAAGGGAAGA 292879 Query 58378 CAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 | ||||| || || || | ||| | ||||||||||| Sbjct 292878 CCAACTTCTTTGAGAAGAGGGTTGGAGAATATCAAAA 292842 >seq596 Length=631412 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || ||||||||| | || || || | || Sbjct 343175 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTCCTCG 343234 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| || ||| | |||||||||||| | ||||| ||||| Sbjct 343235 GACACCATTGACAACGTGAAAGCAAAGA-TCCAAGACAAGGAAGGCATCCCGCCGGACCA 343293 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || ||||| || |||||| | |||||| || |||| || ||| || || Sbjct 343294 GCAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGTAGGACTTTGGCCGACTACAA 343353 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || ||||| || |||||||| | || |||| || || Sbjct 343354 CATCCAGAAGGAGTCGACGCTCCATCTGGTGTTGAGGTTGAGAGGAGG 343401 >seq1128 Length=278557 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| || || Sbjct 246358 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAG 246417 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||||||| | || || || || Sbjct 246418 CGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGATCA 246477 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| || || ||| | || ||| | ||| | ||||||||| Sbjct 246478 GCAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTCGCCGATTATAA 246537 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || ||||| || || || ||||| ||| Sbjct 246538 CATCCAGAAGGAATCAACCCTCCACCTGGTTCTT 246571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || |||||||| || |||||| | || || || | || Sbjct 246815 ATGCAGATATTCGTGAAGACCCTCACAGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 246874 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || |||||||||||| | || || |||||| Sbjct 246875 GACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATCCCTCCGGACCAG 246934 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || |||||||| || | ||| | ||||| ||| Sbjct 246935 CAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAAC 246994 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || || || Sbjct 246995 ATTCAGAAGGAGTCTACCCTTCACCTTGTCCT 247026 Score = 89.7 bits (98), Expect = 5e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 31182 TTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACG 31241 |||| ||| | ||||| || ||||| |||||| |||| ||||| || |||||| |||| | Sbjct 246120 TTGATTCACAGATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACCCTCGAGG 246179 Query 31242 TTGAACCGTCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 | || ||||| |||| |||| | | | ||| | |||||||||||| | Sbjct 246180 TGGAGAGCAGCGACACCATCGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAAGGGATC 246238 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 || || |||||||||||||| || ||||| || || ||| | || ||| Sbjct 246239 CCTCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGAC 246286 >seq1118 Length=308725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || || || || || |||||||| || || |||| ||||| || Sbjct 111551 CATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATAACTCTCGAGGTTGAGAGCTC 111492 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || ||||||||||||| | || || ||||| Sbjct 111491 TGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 111432 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | || || |||||||| ||||| | ||||| ||| | |||||||| Sbjct 111431 ACAAAGGCTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACTCTTGCTGATTATAA 111372 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||| || || || || || |||| || |||| ||||| || Sbjct 111371 CATTCAAAAGGAGTCCACCCTCCACTTGGTCCTACGACTCAGGGGTGG 111324 >seq347 Length=438793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || || || || ||||| || ||||| | || |||||| || Sbjct 270364 CATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACTTTAGAGGTTGAAAGTTC 270305 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| || || | || || || ||| | ||||||||||| | || || |||| Sbjct 270304 TGACACGGTTGATAATGTTAAGGCAAAGA-TCCAAGACAAGGAAGGTATCCCTCCAGACC 270246 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || || ||||||||| | ||||| ||| | || || | Sbjct 270245 AGCAGAGGCTTATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCTGACTACA 270186 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||||||||| || ||||| ||||| || Sbjct 270185 ACATCCAAAAAGAATCCACCCTTCACCTGGTGCT 270152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || ||||| || || || |||||||| ||||| |||| ||||| || Sbjct 270820 CATGCAGATCTTTGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTC 270761 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||||||| | || || ||||| Sbjct 270760 TGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 270701 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || ||||| || || || | |||||| ||| | |||||||| Sbjct 270700 GCAAAGGTTGATCTTCGCCGGTAAGCAACTTGAAGACGGCCGCACTCTTGCTGATTATAA 270641 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| || || || || || |||| || | || ||||| || Sbjct 270640 CATCCAAAAGGAGTCCACCCTCCACTTGGTCCTGCGGCTCAGGGGTGG 270593 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||| |||| || ||||| |||||| | || ||||| || Sbjct 270135 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAGAGTTCG 270076 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || ||| || ||| | |||||||||||| | || | || || Sbjct 270075 GACACCATTGAAAATGTAAAAGCAAAGATTCA-GGACAAGGAAGGGATTCCACTAGATCA 270017 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || || || || ||| |||| || ||| | |||||||| Sbjct 270016 GCAGAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGCACTCTTGCAGATTATAA 269957 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || ||||| ||||| || ||| | ||| | || ||| Sbjct 269956 TATTCAGAAGGAGTCTACTCTGCATCTTGTTCTTCGCCTGCGTGGTGGT 269908 >seq181 Length=541317 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || ||||| ||| | || || ||| Sbjct 240649 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAAT 240708 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || || | |||| | || || | ||| |||||||||||| | || || | Sbjct 240709 CCTCAGATACCATCGACAACGTGAAGGCAAAAATCCAAGACAAGGAAGGCATCCCACCAG 240768 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || || || || |||||||| ||||| | |||||| |||| | ||| | Sbjct 240769 ACCAACAACGCCTCATCTTCGCTGGAAAACAACTTGAAGACGGCCGGACTCTCGCCGACT 240828 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || ||||| || || || || || Sbjct 240829 ACAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCT 240865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445675536091440