Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq339 111 2e-19 >seq339 Length=880584 Score = 111 bits (122), Expect = 2e-19 Identities = 233/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || ||||||||||| | ||| ||||| | | || |||||||| || |||||| Sbjct 293133 CACGCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGT 293192 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| || || ||||| || |||||||||||||| ||| | | | || || ||||| Sbjct 293193 CCTGGCATGAGACCCCGCTTCTTCAGCCAAAATATGGA-GCAGAAGCTCCCGGAGAAGAA 293251 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATG 36333 || ||||| || |||||||| | | ||||| | | ||| |||| || Sbjct 293252 GATCCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGCTGT--TG 293309 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 |||||||| |||||||| |||||| | || || |||| ||||| || || | Sbjct 293310 -ATCCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTG 293368 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 ||||| || || | | || || | || || || | || ||||| ||||| Sbjct 293369 GAAGAGGCGGTGCTTGACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACAT 293428 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 || || || ||||| || || || || || || |||||||| Sbjct 293429 CTCGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAA 293470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658038639701880