Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq596 116 4e-21 seq1128 105 7e-18 seq1118 96.9 3e-15 seq347 93.3 4e-14 >seq596 Length=631412 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || | || | ||| ||||| || || ||||| || ||| | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||||||||||||| || || |||| || |||||||| || || || Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| ||| ||| | | || | ||||| | || ||||||| Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACC 343222 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 343221 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq1128 Length=278557 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| || ||| Sbjct 246358 GCCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGC 246299 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| |||||||| || || || |||| ||||| ||||| || ||||| Sbjct 246298 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 246239 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | |||||| || |||||| Sbjct 246238 GATCCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCAC 246179 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||||||||| || || ||||| || ||||| Sbjct 246178 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 246131 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||| | |||||||| || || ||||| || || Sbjct 246813 CCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCA 246754 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| | ||| || ||||| || || ||| |||| || | ||||| || || || Sbjct 246753 AGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 246694 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||||||| || | | || | |||||| || ||| ||| Sbjct 246693 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 246634 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||||||| | || || || || || ||||| Sbjct 246633 TCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || | ||| | ||| | || || || || || |||||||||||| Sbjct 246586 GCCACCACGGAGGCGAAGAACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCGGC 246527 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| |||||||| || || || |||| || | |||||||| || || Sbjct 246526 GAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCGGTGG 246467 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | |||||| || ||| || Sbjct 246466 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGAC 246407 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 246406 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 246359 >seq1118 Length=308725 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCG 139607 ||| | ||| ||||||| || || || ||||| |||||||| || || |||| || Sbjct 111791 ACGGAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCC 111850 Query 139608 AGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 | || || ||||||||||||||| ||||||| | |||||| || || || || || || | Sbjct 111851 A-TCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCT 111909 Query 139668 TGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 |||| ||| || || | | || | ||||| | | || ||||||| ||| | Sbjct 111910 TGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACCTCAAGGGTGA 111969 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | |||||||| || || ||||| Sbjct 111970 TGGTCTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| ||||||||||||||||| | |||| ||||| Sbjct 111342 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCA 111401 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||||||||| ||||||| | ||| || || ||||| |||||||| ||||| | Sbjct 111402 AGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 111461 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | | ||| ||||| | || | || ||| Sbjct 111462 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATGGTTTTG 111521 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||||| || || || ||||| Sbjct 111522 CCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 >seq347 Length=438793 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| ||||| | || ||||| || || |||||||| || | |||| Sbjct 270832 ACGGAGAACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCC 270891 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || ||||||||||||||| |||| || | ||||||||| || || || || || || Sbjct 270892 ATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGGATCCCCTCCTT 270951 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | || |||||||| | | || ||||||| ||| | Sbjct 270952 ATCCTGGATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACCTCAAGGGTGAT 271011 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | |||||||| || || ||||| Sbjct 271012 GGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||||| ||||| ||||||||||| | |||| | Sbjct 270605 CGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCG 270664 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || || ||||| || |||||| | |||||| || ||||| |||||||| ||| Sbjct 270665 TCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTG 270724 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | | ||| ||||| | || | Sbjct 270725 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATG 270784 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || | |||||||| || || ||||| Sbjct 270785 GTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495962883554400