Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq339 145 1e-29 >seq339 Length=880584 Score = 145 bits (160), Expect = 1e-29 Identities = 383/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||||||||||| ||| ||||| | | | |||||||| || |||||| Sbjct 293133 CACGCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGT 293192 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| || |||||||||||||| ||| || ||| || ||||| Sbjct 293193 CCTGGCATGAGACCCCGCTTCTTCAGCCAAAATATGGA-GCAGAAGCTCCCGGAGAAGAA 293251 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGTCATG 50135 ||| ||||| || |||||||| || | ||||| | | | || ||||| || Sbjct 293252 GATCCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGCTGT--TG 293309 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 |||||||| |||||||| |||||| | || || |||| ||| || ||||| | Sbjct 293310 -ATCCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTG 293368 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||| || || | | || || | || || |||| || ||||| ||||| Sbjct 293369 GAAGAGGCGGTGCTTGACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACAT 293428 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || || ||||| || || || ||||| || |||||||| | ||||||| | Sbjct 293429 CTCGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGAC 293488 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| | || || || || | || | || || || || ||||| ||| || Sbjct 293489 CTGGATCTCGGTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGC 293548 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 || || || | | || || || || | |||| ||| |||| | ||| | Sbjct 293549 GAAGAAGGCGAGGATGTGAGAGATGAAGTGGGTCTCGTCGGGGGTTAAGGCTTCCCAGTG 293608 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 | | || | || | ||| || || || | ||||| || || ||||| ||||| || Sbjct 293609 GCGGGTGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTT 293668 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||||| | |||||| || | || ||||| ||||| || Sbjct 293669 GTACATCTCCCAGATTTCCGGGTACTGGATGGGGAACAT 293707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718122389883480