Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq339 136 5e-27 seq3231 93.3 6e-14 >seq339 Length=880584 Score = 136 bits (150), Expect = 5e-27 Identities = 381/579 (66%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || ||||||||||||| ||| || || | | || |||||||| || |||||| Sbjct 293133 CACGCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGT 293192 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| || || ||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 293193 CCTGGCATGAGACCCCGCTTCTTCAGCCAAAATATGGA-GCAGAAGCTCCCGGAGAAGAA 293251 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATG 42240 ||| ||||| || |||||||| | | ||||| | | ||| |||| || Sbjct 293252 GATCCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGCTGT--TG 293309 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 |||||||| |||||||| |||||| | || || |||| ||| || ||||| | Sbjct 293310 -ATCCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTG 293368 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 ||||| || || | | || || | || || |||| || ||||| ||||| Sbjct 293369 GAAGAGGCGGTGCTTGACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACAT 293428 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 || || || ||||| || || || ||||| || |||||||| | |||||||| || Sbjct 293429 CTCGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGAC 293488 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 ||| | || || || || | || | || ||| || || ||||| ||| || Sbjct 293489 CTGGATCTCGGTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGC 293548 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATC 42540 || || || | | || || || | | ||||| || ||||| | ||| | Sbjct 293549 GAAGAAGGCGAGGATGTGAGAGATGAAGTGGGTCTCGTCGGGGGTTAAGGCTTCCCAGTG 293608 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | | || | || | ||| || || || | ||||| || || || || ||||| || Sbjct 293609 GCGGGTGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTT 293668 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 ||||| | |||||| || | || || || ||||| || Sbjct 293669 GTACATCTCCCAGATTTCCGGGTACTGGATGGGGAACAT 293707 >seq3231 Length=135437 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | |||||| ||||| || || ||||| || ||||| | || | Sbjct 18320 GTTCCAGCATTGAAAAGGGTAGGTGAAGCATGAGTGAACCACCGTTGAGACATCATATGG 18379 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | ||| | || || ||||| | ||| || ||||| || | || | |||||| Sbjct 18380 TATGTTTTGATAACAGAGTCAATATCATCCTTG-TGGATTCCAACAGAAACCCTCATTAA 18438 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 |||||| |||||||| || || | ||| | | ||||| | |||||| | || | Sbjct 18439 CATATGTTGAGGTCTCTCTACAACCTTCCCTTGGACCTTCAAGAGGTAGGACCTCTCAAG 18498 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| || ||||| || | || |||||| || || || ||||| Sbjct 18499 GGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATAAT 18546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671002396663320