Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq339 134 2e-26 >seq339 Length=880584 Score = 134 bits (148), Expect = 2e-26 Identities = 393/588 (67%), Gaps = 28/588 (5%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| ||| | || || ||||| |||||||| ||||| |||||||||| | Sbjct 293706 TGTTCCCCATCCAGTACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCT 293647 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| ||||||||||| ||| ||||| | | ||||| | || || Sbjct 293646 GGACCGCCGAGGAGGTCGATCTCTCCCAGGACACCCGCCACTGGGAAGC---CTTAAC-- 293592 Query 125116 AAACTGAGCGAG----AGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || |||| | || || || ||||| | |||||||| |||| |||||| || Sbjct 293591 -CCCCGA-CGAGACCCACTTCATCTCTCACATCCTCGCCTTCTTCGCCGCCTCCGACGGC 293534 Query 125172 ATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTG 125228 |||||| ||| || || | | | || ||| ||| | ||| | | |||| Sbjct 293533 ATCGTCCTCGAGAACCTCGCCGGC-CGTTTCATGACCGAGAT--CCAGGTCGCCGAGG-C 293478 Query 125229 TCGTG-CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || | ||| ||||| ||||| ||| || |||||| | ||||| || |||||| | Sbjct 293477 CCGCGCCTTCTACGGCTTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGTCT 293418 Query 125288 ACTGATTGACATGTACATTCGCGA-TCCGCAACGT-AAACACATGCTCTTTAACGCAATC 125345 ||| | || | ||||| || || | | || || ||| ||||| |||| ||| Sbjct 293417 CCTGCTCGAGACCTACATCAAGGACTCAG--AGGTCAAGCACCGCCTCTTCCACGCCATC 293360 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || |||||||||| | | ||||| | |||| || ||||||| | | | Sbjct 293359 GAGACGGTGCCGTGCGTGGCCAGGAAGGCGGATTGGGCCATCAAGTGGATCAACAGCTCC 293300 Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || | | |||||| || | || || || || ||| || || |||||||| || Sbjct 293299 GAG---ACCTTCGCCGAGAGGATCGTCGCCTTTGCTTGCGTGGAAGGGATCTTCTTCTCC 293243 Query 125466 GGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || || || ||| |||| |||||||| |||||||| || |||||||| ||||| || Sbjct 293242 GGGAGCTTCTGC-TCCATATTTTGGCTGAAGAAGCGGGGTCTCATGCCAGGACTCACCTT 293184 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | |||||||| | || || ||||| || | ||||| || ||||| Sbjct 293183 CTCCAACGAGTTGGTGTCACGTGACGAAGGTTTGCACTGCGATTTTGC 293136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740908144345320