Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1118 100 2e-16 seq347 93.3 3e-14 seq181 87.8 1e-12 >seq1118 Length=308725 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || |||||||| ||| ||| | | | ||||| | ||| Sbjct 110892 TGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCTTCAAGCTGT 110951 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||| || | || | | |||||||| || || || || ||||| ||| ||| Sbjct 110952 TTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTTT 111011 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || ||||| | |||| || ||||| || || ||||| || || Sbjct 111012 GC-CTTCACATTATCAATCGTATCAGAACTTTCAACCTCTAAAGTGATTGTTTTGCCAGT 111070 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| |||||||| Sbjct 111071 GAGGGTTTTCACAAAGATTTGCAT 111094 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| || || | | ||| || || || ||||| || || || ||||| || || Sbjct 111550 TGCCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAG 111609 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||| | ||| || |||||| | |||| | ||| ||||| || Sbjct 111610 CAAGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTG 111669 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| || ||| ||| ||| | || ||||| || |||| | Sbjct 111670 GGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCTTTCAA 111729 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || || |||||||||||||| || ||||| Sbjct 111730 CCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| ||||| || ||||| ||||| || || ||| | | | || || Sbjct 111797 AACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCCATCCTC 111856 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| ||||| | |||| | ||| ||||| ||| || || || ||||| Sbjct 111857 AAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTG 111916 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | || ||||| || |||| || || | ||| ||||| || Sbjct 111917 GATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTT 111976 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| || ||||| Sbjct 111977 TCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 >seq347 Length=438793 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| ||||| ||||| ||| | | ||||||| Sbjct 270611 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCGTCTTCA 270670 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || || ||| | ||||| | ||| ||||| || || ||||| ||||| Sbjct 270671 AGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 270730 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||| || | || || || | || |||||||| Sbjct 270731 ATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTTTTG 270790 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| || ||||| Sbjct 270791 CCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| |||||||| |||||||| || ||| | | | ||||| | ||| Sbjct 270161 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCAAGCTGT 270220 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||| || | || | | || ||||| || || ||||| ||||| || ||| Sbjct 270221 TTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTT 270280 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || | || || | |||| || ||||| || || || || || || Sbjct 270281 GC-CTTAACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTGCCAGT 270339 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| |||||||| Sbjct 270340 AAGGGTTTTCACAAAGATTTGCAT 270363 >seq181 Length=541317 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || || || || || || |||||||| ||| ||| | | ||||||| | |||| Sbjct 240856 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCTTCAAGTTGT 240797 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | || | ||||||||||| ||| || ||||| ||||| ||||| Sbjct 240796 TTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTT 240737 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || |||||||| ||| || |||| ||| || || || || || Sbjct 240736 GCCTTCACGTTGTCGATGGTATCTGAGGATTCGACCTCTAGGGTTATCGTCTTCCCCGTT 240677 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 240676 AGGGTTTTCACGAAGATCTGCAT 240654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362107219939887