Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq347 91.5 1e-13 seq335 84.2 2e-11 >seq347 Length=438793 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| ||||||||||| |||||||| ||||| || | || | ||||||||||| Sbjct 269933 TGCAGAGTAGACTCCTTCTGAATATTATAATCTGCAAGAGTGCGCCCATCCTCCAGCTGC 269992 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || | ||||||||||| | || | || || ||||| ||| || Sbjct 269993 TTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGGAATCCCTTCCTTGTCCTGAATCTTT 270052 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 |||||| | | | || || | ||| || | ||| |||||||| || || Sbjct 270053 GCTTTTACATTTTCAATGGTGTCCGAACTCTCAACCTCAAGGGTGATGGTTTTTCCAGTC 270112 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 ||||||||||||||||| ||||| Sbjct 270113 AAAGTTTTGACAAAAATCTGCAT 270135 >seq335 Length=478728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| ||||||| ||| | || ||||||||||| |||||||| || | Sbjct 394874 TTCCTCCCCTAAGCCTCAACACCAGGTGAAGTGTCGACTCCTTTTGGATATTGTAGTCAG 394815 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | || |||| ||||| || ||| |||| | |||||||||||| | Sbjct 394814 CAAGGGTTCGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGCTGATCAGGAG 394755 Query 18933 GCACGCCCTCTTTGTC 18948 | | || |||||||| Sbjct 394754 GGATACCTTCTTTGTC 394739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414490407153958