Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq335 84.2 2e-11 seq1118 82.4 6e-11 seq596 82.4 6e-11 >seq335 Length=478728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 |||||||| ||||||| | | ||||||||||| || ||||| || || ||||| || Sbjct 394884 TTTATCATAGTTCCTCCCCTAAGCCTCAACACCAGGTGAAGTGTCGACTCCTTTTGGATA 394825 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 ||||| || | | ||| ||||||||||||||| || ||| |||| | ||||| Sbjct 394824 TTGTAGTCAGCAAGGGTTCGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGC 394765 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| || | ||||||||||| Sbjct 394764 TGATCAGGAGGGATACCTTCTTTGTC 394739 >seq1118 Length=308725 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || |||||||| || |||||||| ||| | | ||| |||||| | ||| Sbjct 110892 TGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCTTCAAGCTGT 110951 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 ||||| ||| |||||||||||||||| || ||| | || || ||||| ||| ||| Sbjct 110952 TTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTTT 111011 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | ||| | ||| | ||| || | || || |||||||| || Sbjct 111012 GCCTTCACATTATCAATCGTATCAGAACTTTCAACCTCTAAAGTGATTGTTTTGCCAGTG 111071 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | ||||| ||||| |||||||| Sbjct 111072 AGGGTTTTCACAAAGATTTGCAT 111094 >seq596 Length=631412 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 |||||||| ||||||||||||| ||| || || || || || || |||||||| ||| | Sbjct 343402 TCCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 343343 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT-CGACGG 20099 || ||| || ||||| | ||||| || || | || || | || || | || ||| Sbjct 343342 CAAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGG 343283 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGG-TTCC 20158 | | |||||| ||||| || ||| |||||| | | ||| | || | ||| ||| Sbjct 343282 G-ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTC-CGAGGACTCC 343225 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| || || || || || | ||||| || || || |||||| Sbjct 343224 ACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATT 343174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419503810584267